Lacipirellula limnantheis: I41_54350
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Entry
I41_54350 CDS
T09857
Symbol
rpoA_3
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
llh
Lacipirellula limnantheis
Pathway
llh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
llh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I41_54350 (rpoA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llh03021
]
I41_54350 (rpoA_3)
03400 DNA repair and recombination proteins [BR:
llh03400
]
I41_54350 (rpoA_3)
Enzymes [BR:
llh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I41_54350 (rpoA_3)
Transcription machinery [BR:
llh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I41_54350 (rpoA_3)
DNA repair and recombination proteins [BR:
llh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I41_54350 (rpoA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
QDT76190
UniProt:
A0A517U6J2
LinkDB
All DBs
Position
complement(6626742..6627734)
Genome browser
AA seq
330 aa
AA seq
DB search
MHIRWRGLELPSQVICDASSLTRTYGKFIAEPFERGFGTTVGNGLRRILLSSLEGSAVTQ
IKVHNAQHEFTTIEGVLEDVTDIVLNIKSLVVKNHSDSTKVLRVERKTAGEVRASDIETD
EAVEIINKDLLIATLTADVPFVVEMVVENGRGYVSATEQAEQVHEIGIIPIDAVFSPVTR
VRYDVEETRVGQKTNYDKLTIEIWTDGSIGPEMAIVESAKILRKHLTPFVQYTHLGPQIH
AAARGGQPVGDTALESKLNMPLADLNLSVRASNCLESENIMTVRDLVIRTEDQLLEVRNF
GETTLAEVQQKLRDLNLHLGMRVPSAAASF
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgcatattcgatggcgtggacttgagctgcccagtcaggtgatctgcgacgcgtcgagc
ctcacgcggacctacggcaagttcattgccgagccgttcgagcgcgggttcggtacaacc
gtcggaaacgggttgcgacggatccttctctcgagcctcgagggaagcgccgtcacgcag
attaaggttcacaacgcgcagcacgaattcacgacgatcgaaggcgtgcttgaagacgtc
accgacatcgtgctcaacattaagtcgcttgtggtgaagaaccacagcgattcgacgaaa
gtcctgcgcgtggagcgaaagaccgccggcgaagtgcgcgcttccgacatcgagacggac
gaggcggtggagatcatcaataaggatctgctcatcgcaacgctgaccgctgacgtgccc
ttcgtcgtggaaatggtcgtcgagaatggtcgcggctacgtctcggcgacggagcaagcc
gagcaggtgcacgagattggcatcatcccgatcgatgcggtcttcagcccggtgacccgc
gttcgttacgacgtcgaagaaactcgcgtcggtcagaagacgaactacgacaagctgacg
atcgagatttggaccgatgggtcgattgggccggagatggccatcgtcgagtcggccaag
attttgcgcaagcatctcacgccgtttgtgcagtacacgcacttgggcccgcagattcac
gccgcggctcgcggcgggcagccggtcggcgacacggcgctcgagtcgaagttgaacatg
ccgctggccgacctcaacctgtcggtgcgggcgagcaactgccttgagtccgagaacatc
atgacggtgcgcgacttggtgattcgcaccgaggaccaactgttggaggtccgtaacttt
ggcgagacgactctcgcggaagttcagcagaagcttcgcgacttgaacttgcatcttggg
atgcgggtgccgagcgctgcggcgagcttctag
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