Lactococcus lactis subsp. cremoris UC509.9: uc509_0981
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Entry
uc509_0981 CDS
T02415
Symbol
vacB2
Name
(GenBank) Exoribonuclease R, VacB family
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lli
Lactococcus lactis subsp. cremoris UC509.9
Pathway
lli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
uc509_0981 (vacB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lli03019
]
uc509_0981 (vacB2)
03016 Transfer RNA biogenesis [BR:
lli03016
]
uc509_0981 (vacB2)
Enzymes [BR:
lli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
uc509_0981 (vacB2)
Messenger RNA biogenesis [BR:
lli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
uc509_0981 (vacB2)
Transfer RNA biogenesis [BR:
lli03016
]
Prokaryotic type
tRNA degradation factors
uc509_0981 (vacB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
AFW91543
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Position
966852..969284
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AA seq
810 aa
AA seq
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MDYLENSSKKARSVEELSVALHMNKAKDYKVFVKTLASLEAEHLLHFTAKGKVELAEQEE
AKVVISGIFRANAAGFGFVSIDADEPDVFIGRGQTGFALDGDEVFIEIDKNANSLKGTAA
EGHVVEIIRHELHQVVGTFVALNDEEKEQTGLIGFVKSRNKKIPYRVYLGDEGLKPENKA
IVRVEITHYPDKEFPQTMQGLVTEIIGQANDQGIDVLEVLASMDIVSEFPKEVLDQADSV
PEEVPESEIAGRVDYRNEITFTIDGADAKDLDDAVHAKRLGNGNYELGVHIADVSHYVTE
NSPLDKEAYERGTSVYVTDRVVPMLPERLSNGICSLNPRLNRLTQSCVMEISPEGRVVNY
QISQSIIKTTERMTYDAVNQMIAGAKDTLEKYAKIADSVKIMVEIHHILEAMRKQRGAID
FDTVEAKIIVNEKGLPIEIRKRSRGIAERMIESFMLEANETVATHFEAHGLPFIYRIHEQ
PKADRLQRFIDFAATFGMQIEGTSNGIDQKVLQAFMKKIKGQPGEMVLSTMLLRSMQQAR
YSENNEGHFGLAAENYTHFTSPIRRYPDLLVHRLIREIGAGKIPANLLQKWEEKIPEIAE
HSSHRERRAVDAEREVEKMKKAEFMEEHVDEEFEGIIASVTRFGMFIELENTIEGLVHIS
TLKGDYFTYHERMLALIGERTGLTFKIGQPIKIKVVKADKMTGEIDFEYLPSELDLIDKS
AKAKKKPESKGRKKSNQSLKVKSVAPKAAGKAGSKSKEGRSTDEKPEFDKKKKNSDKKPF
YSKAAKGKFTDKKENGKKFTDGIKKAHKRP
NT seq
2433 nt
NT seq
+upstream
nt +downstream
nt
atggactatcttgagaatagttcaaaaaaagctcggtcagtggaagaattgtcagttgct
ttacatatgaataaggccaaagattacaaagtttttgttaaaactttggcttcactagaa
gctgaacacttgcttcattttactgctaaagggaaagtagaattagcagaacaagaggaa
gcaaaagtagttatcagcgggattttccgagcaaatgcggctggatttggttttgtaagt
attgatgctgacgaaccagacgtctttattggacgcgggcaaacaggttttgcacttgat
ggagatgaggttttcattgagattgataagaatgccaactccctaaaaggaacggctgcc
gaggggcatgttgttgaaattatccgtcatgagcttcatcaagtcgttggaacttttgtt
gctttaaatgatgaagaaaaagagcaaactggactgattggtttcgttaaatctagaaat
aaaaaaatcccttatcgggtatatctgggtgatgaaggactcaaaccagaaaataaggca
attgttcgtgtagaaatcacacattatcctgataaagaatttcctcaaaccatgcaagga
ctggtaacggaaattattggacaggcaaatgaccaagggatagatgtgttagaagttttg
gcttcaatggatattgtatcagagtttccaaaagaagttttggatcaagctgattcagtg
ccagaagaagtgccagaaagtgaaattgcgggtcgagttgattatcgtaatgaaattacg
ttcacaattgacggagctgatgccaaagaccttgatgatgctgtccatgccaaacgttta
ggaaatggaaattatgaattaggtgttcatattgcggatgtttcccactacgtaacggaa
aattcacctttagataaagaagcttacgaacgtggaacatcggtctatgttactgacaga
gtggtaccaatgttgccagagcgtttatcaaatgggatttgttcattgaacccacgtttg
aatcgcttgactcaatcctgtgtgatggaaattagcccagaaggtcgagtggttaattat
caaatttcacaatcaattattaagacaactgaaagaatgacttatgatgcggtcaatcaa
atgattgcaggagctaaagacacgcttgaaaagtatgctaaaattgctgattctgtgaaa
atcatggttgaaatccatcatattttagaagcgatgcgtaaacaacgtggagccattgat
ttcgacacggtagaggcaaaaatcattgtaaatgaaaaaggcttacctattgaaattaga
aaacgcagtcgtggcattgctgaacgaatgattgaatcattcatgctcgaagccaatgaa
acggtggccactcattttgaagcacatggcttgccatttatttatcggattcacgagcaa
ccaaaagcagatagattacaaagatttattgattttgcagcaacttttggaatgcaaatt
gaaggaacctcaaacggaattgatcaaaaagttttacaagccttcatgaaaaaaatcaag
gggcaacctggtgaaatggtcttgtcaacaatgctattgcgtagtatgcaacaagctcgt
tattcagaaaataatgagggtcactttggtttagctgccgaaaattatactcactttacc
tcacctattcgtcgttatcctgatttgttggttcatcgtttgattcgtgaaattggtgcg
ggtaaaattccagcaaatcttttacaaaaatgggaagaaaaaatcccagaaattgcggag
cactctagtcatcgtgaacgtcgagcggttgatgctgaacgtgaagttgaaaaaatgaaa
aaagccgagttcatggaagaacatgtggacgaagagtttgaaggaattattgcttcagtc
actcgttttggtatgtttattgaacttgaaaatacaatcgaaggattagttcatatttca
acgttgaagggtgattatttcacttatcatgagcgaatgttagctttgattggtgaaaga
acaggattgacttttaaaattggtcaaccaattaaaatcaaagtcgtcaaagcggataag
atgacaggcgaaattgactttgagtaccttccatcagaattagatttgattgataaatcg
gctaaagctaagaaaaagcctgaatctaaaggtcgcaaaaaatcaaatcaatcccttaaa
gttaaatctgtcgcaccaaaagctgctggtaaagctggcagtaaatcaaaagagggtaga
agtactgatgaaaaacctgaatttgataagaaaaagaaaaattcagacaaaaaacctttt
tatagcaaagctgccaaaggtaaatttactgacaaaaaagagaatggcaaaaaatttact
gatggaataaaaaaagcacacaaaagaccttaa
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