Lactococcus lactis subsp. cremoris UC509.9: uc509_1208
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Entry
uc509_1208 CDS
T02415
Symbol
vacB2
Name
(GenBank) putative exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lli
Lactococcus lactis subsp. cremoris UC509.9
Pathway
lli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
uc509_1208 (vacB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lli03019
]
uc509_1208 (vacB2)
03016 Transfer RNA biogenesis [BR:
lli03016
]
uc509_1208 (vacB2)
Enzymes [BR:
lli01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
uc509_1208 (vacB2)
Messenger RNA biogenesis [BR:
lli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
uc509_1208 (vacB2)
Transfer RNA biogenesis [BR:
lli03016
]
Prokaryotic type
tRNA degradation factors
uc509_1208 (vacB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
Rep3_N
Motif
Other DBs
NCBI-ProteinID:
AFW91737
LinkDB
All DBs
Position
1195952..1197955
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AA seq
667 aa
AA seq
DB search
MVQLSELASALKQTESKGVFSKHPKGFGFVHPECETDKTNDIYIGQNETKFAMDGDKVTV
KVLYPKTERRGASGQIIKINERAVVDTVGTYRSLSNRQAKALGYKGRIELFNDRISDTLY
IKQPLTGVQEEDVVSIKVTQYPTDTKAFEGKITQIIGHKGEVGLDILEVLYAMKIPQEFS
AETLAEAESFSEELTQEDLQGREDYRNEITYTIDGEDSKDLDDAIHVKKLSNGHFELGVH
IADVSHYVTEGSSLNEEAYARATSVYVTDRVVPMLPVRLSNNLCSLNEAQERLTMSCLME
IDDKGKIVTYKISPSVIKTTYRMTYSNVNKMIHQGQEGHREALEKFSKIADSIEVAVELH
EILETMRKDRGMIEFDESEAKIILDDEGHPIEIVKRDRDTAERMIESFMLMANETVALDF
QKKKLPSLYRVHETPKEKAFAKLMEAAAEAGFSLSSDSHQAINFFADEIKGTSFEKALTY
QLRHTMSTAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLLHLYPSDHSNRTKDEW
KERLPEIASHSSDMEHRAVVTERIIDAMKKAEYMLERIGEVYTGTITGVQKFGIFVALDN
TVEGLVRVPNLHTGTTEELEFDEEMSIIKGKKSETIYQVGKEIKIRVIAANKRKGTVDFE
QIAPEKN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggttcagctatcagaattagcatcagcacttaaacaaacagaaagtaaaggagtattt
tctaaacatcctaaaggctttggttttgtacatccagagtgtgagacagacaaaactaat
gatatctacatcggtcaaaacgaaactaaatttgcaatggatggagataaggttactgtt
aaggttttataccctaagacagaaagacggggcgcaagcggacaaattattaaaatcaat
gaacgagcagtcgttgatacagttggaacttaccgttctttatctaatcgccaagccaaa
gctttgggatataaaggtcgaatcgaactctttaatgaccgtatttcagatactctttac
ataaaacagcccttaacaggagtacaagaagaagatgtagtaagtattaaagttactcaa
tatccaacagatactaaagcatttgaaggaaaaattacgcaaatcattggtcataaaggt
gaagttggccttgatatcttagaagttttgtatgctatgaaaattccacaagaattctca
gctgaaacattagctgaggctgagtcattttctgaagaattaacccaagaagacttgcaa
ggacgtgaagactatcgtaatgaaatcacttataccattgatggagaggattctaaagat
ttagatgatgcgattcatgttaagaaattatcgaatggacattttgaattaggggtccac
attgctgatgtcagtcattatgtgaccgaaggttcttctttgaatgaagaagcttatgcg
cgagcaacctcggtttatgtgactgatagagtagttccaatgttacctgtcagattgtct
aataacctgtgctcacttaatgaagctcaagaacggctaacaatgtcttgcctaatggaa
attgatgataagggcaagattgtcacttataagatatctccatcagtaataaaaacaact
taccgcatgacttatagcaatgtgaacaagatgattcatcaggggcaagaaggacaccgc
gaagcattagaaaaattttctaaaattgctgattcgatagaagtagccgttgaacttcat
gaaattctcgaaacaatgcgaaaagacagagggatgattgagtttgatgagagtgaagca
aaaataattttagatgatgagggtcacccaattgaaatcgtaaaacgtgaccgtgatact
gcagaacgcatgattgaatccttcatgcttatggcaaatgaaactgttgctcttgatttc
caaaagaaaaaattaccttcattgtatcgtgtccatgaaactcctaaggaaaaagcattt
gctaaattgatggaagctgctgcagaagctggattttctttgagctctgactctcatcaa
gccataaatttctttgctgatgagattaaaggtacaagttttgaaaaagccttaacttat
caacttcgtcatactatgtcaacagcggtttattctgaaaaaaatacaaaacattttgga
cttgcagcgactaactacacacatttcacaagtccaattagacgttatcctgacctaatt
attcatcgtttattacatttatatccttctgaccattccaaccgtactaaggatgaatgg
aaagaacgtttgcctgaaattgctagtcactcttccgatatggaacaccgtgctgttgtc
actgaacggattattgatgcgatgaagaaagcagaatacatgttagaacgtatcggtgag
gtttatactggtacgatcacaggagtacaaaagtttggtatttttgtagcactagataat
accgttgaaggtttagttcgagtaccaaatttacatactgggacaacagaagaacttgaa
tttgacgaagaaatgagtattattaaagggaaaaaatcggaaacaatttatcaagttgga
aaagaaataaaaattcgtgttattgctgccaataaacgaaaaggaacagtagattttgaa
caaatcgctcctgaaaaaaactag
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