Lactococcus lactis subsp. lactis KF147: LLKF_0405
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Entry
LLKF_0405 CDS
T01141
Symbol
rheA
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
llk
Lactococcus lactis subsp. lactis KF147
Pathway
llk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLKF_0405 (rheA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llk03019
]
LLKF_0405 (rheA)
03009 Ribosome biogenesis [BR:
llk03009
]
LLKF_0405 (rheA)
Enzymes [BR:
llk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LLKF_0405 (rheA)
Messenger RNA biogenesis [BR:
llk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LLKF_0405 (rheA)
Ribosome biogenesis [BR:
llk03009
]
Prokaryotic type
rRNA helicases
LLKF_0405 (rheA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ADA64175
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All DBs
Position
399981..401624
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AA seq
547 aa
AA seq
DB search
MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI
EKIDASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLKAGA
HIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEARQTLLF
SATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLDVERPE
LAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAA
RGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIENMTKK
PMKGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEKFDAKELVAL
LLQGRVKDPDNQEEVKITAERPLPYNGEGKGFKKKGKGGGGRYKGRGNGDRDGNRGGYRG
NRDGKDGERGGDRKRNWKDRDDNRGGYRGKRDDRRFDDRKQGEKTPRKRTTGTEKSAGFV
MRSRGDK
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttagtgaactcggcctgtcagaaggaatcgtaaatacacttacagagattggg
tatgaacaaccaacaccaatccaagaacaaacaattaaacttgcacttgaagggcgtgac
gttctaggtcaagcgcaaacaggaactggtaaaacagcagcatttggtcttccaacaatt
gaaaaaattgatgcttctaatccagctattcaagcactcgttattgctccaacccgcgaa
cttgcagttcaaggacaagaagaacttttccgttttggtaaatcaaaagggcttaaagtt
cgtactgtttttggtggttcaagtattgaaaaacaaattaaaggtcttaaagctggtgca
catattgttgtgggaacaccaggacgtttggttgacttgattaaacgtaaagcaattaaa
ttggatcaacttgaaactttgattcttgatgaagctgatgaaatgttgaacatgggattc
ttggaagacattcatttcatcattgaaaaaacaccagaagctcgtcaaacattgcttttc
tcagcaacaatgccaaatgacatcaaaaaaattggtgtgaaattcatgaagaatcctgaa
cacatcaaaattgcagccaaagaaatgactgctgaccgtattgatcaatattttgtaaaa
acaaaagaatttgaaaaatttgatgttttgactcgtttgcttgatgttgaacgtccagaa
cttgcaattgttttcggtcgtacaaaacgtcgtgttgatgaattgattcgtggtcttaaa
ttgcgcggttaccgtgctgaaggaatgcacggagatttggaccaaaataaacgtttggct
gttttgcgtgatttcaaagcaggacatattgacgttttggttgcaactgacgttgctgct
cgtggacttgacgtgtcaggagttactcacgtttataactacgatattactcaagaccaa
gaaagctatgttcaccgtatcggtcgtaccggccgtgctggtaaatcaggacgttcagta
acatttgtttcatacaatgaaatgggttatcttcgtgccattgaaaatatgactaaaaag
ccaatgaaaggcttgaaaccacctacaaaagaagaagcttaccaagcgtcactctcagta
gctatggatgatgtgcttcgtgatttgtctgatgattcagctaaagcaaaattggctaaa
tttgacaaacaagcagcgagcctacttgaaaaatttgatgctaaagaattggttgcttta
cttcttcaaggtcgcgtaaaagaccctgataatcaagaagaagttaagattacagctgaa
cgtccattgccatataatggtgaaggaaaaggcttcaagaaaaaaggtaaaggtggcggc
ggacgctacaaaggtcgtggaaatggcgaccgtgatggcaaccgtggcggttaccgtgga
aatcgtgatggtaaagatggcgaacgcggtggagatcgtaaacgcaactggaaagaccgt
gatgataaccgtggaggttaccgtggaaaacgtgatgaccgtcgttttgacgatcgtaaa
caaggagaaaaaactcctcgtaaacgtaccacaggaactgaaaaatcagctggcttcgta
atgcgtagccgtggtgacaaataa
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