Lactococcus lactis subsp. lactis KF147: LLKF_1770
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Entry
LLKF_1770 CDS
T01141
Symbol
yqgA
Name
(GenBank) mRNA degradation ribonuclease, metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
llk
Lactococcus lactis subsp. lactis KF147
Pathway
llk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLKF_1770 (yqgA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llk03019
]
LLKF_1770 (yqgA)
Messenger RNA biogenesis [BR:
llk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLKF_1770 (yqgA)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
BHD_3
eIF-1a
P8
Motif
Other DBs
NCBI-ProteinID:
ADA65359
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Position
complement(1827207..1828919)
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AA seq
570 aa
AA seq
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MSNIKITPLGGVREFGKNMYLVEVEEQIFVLDAGLKYAEMDQLGVDFVIPDITYLLENAD
RVAGIFLTHGHADSIGALPYIVSELKVPVFGSELTIELAKINVKNYADSRKFNDFHVVTE
DTEIDFGKAVISFFSTTHTIPESLGIVISTNDGNIVYTGDFRFDPAVAKGYRTNMRRLAE
IGNSGVLALLSSSPNALSTMQSASEHEIYEKIYDYIDDNEGRVIIACNAGNLGRIQQTID
AAIKLGRRIAFTGEDMDQIIETATRLNKLQIVDKKSIIKPAEIKKYADNELVILETGRMG
EPLKSLGDMAHRRHKYVKIKDGDLVLAVTSPSVSYETTIARIENEIYKAGGVMKMLASDL
KISGHANARDLQFLLDIFRPKNLIPIQGEYRELSAHADLAMEMNILPEHIFIAKRGETVS
LENGDMIPSGVIQAENVMIDGSGVGDIGSVVLRDRKVLSEDGIFIAVITISKTERKIVSK
SRVHTRGFVYVKTSRDLMREAGELVNETVDKYLSGKEFDWAEIKGSIRDALGKFLYEQTK
RKPVILPVVMEARQPQDLNKRYTKKNHNKK
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatattaaaatcactccattaggtggtgtgcgtgaatttggtaagaacatgtat
ttagttgaggttgaagagcaaatttttgtgcttgatgcaggacttaaatatgctgaaatg
gatcaacttggtgttgactttgttattcctgatattacatatcttttagaaaatgcggat
cgtgtcgcaggaattttcttgactcacggacatgctgattcaattggtgctttgccttat
atcgtttctgaattaaaagttcctgtttttggttcagaattaacaatcgaacttgcaaaa
attaatgtcaaaaattatgctgacagtcgcaaattcaacgattttcatgttgtaactgaa
gatacagaaattgattttggtaaagccgtcatttcattcttctcaacaacacatacaatt
ccagaaagcttaggaattgttatttctacaaatgacggaaacattgtttatacaggtgat
ttccgttttgatccagctgttgcaaaaggctatcgtaccaatatgcgccgattggctgaa
attgggaatagtggagtccttgctttactttcgtcatcaccaaacgctttgtcaacaatg
caatctgctagcgagcatgaaatttatgaaaaaatttatgactatattgatgacaatgaa
gggcgggtcattattgcttgtaacgcgggtaatttaggacgtattcaacaaacgattgat
gctgccattaaacttggtcgtcgtattgcttttacaggcgaagatatggatcaaatcatc
gaaacagcaactcgtcttaacaaattacaaattgttgataaaaaatcaattattaaacca
gcagaaattaaaaaatatgctgataatgagttagttattttagaaacaggacgaatgggt
gaaccacttaaatctcttggagacatggctcatcgtcgtcataaatacgttaaaattaaa
gatggagatttagtacttgctgttacaagtccatctgtctcttatgaaacaacaattgct
cgtattgaaaatgaaatctataaagctggcggagtcatgaaaatgttggcttcagatttg
aaaatatctggtcacgcgaatgctcgtgatttgcaattcttacttgatatcttccgtcca
aaaaatttgattccaatccaaggggagtatcgtgaacttagtgcccatgctgatttagca
atggaaatgaacattttaccagaacatatctttatcgctaaacgtggcgaaacagtcagt
ttggaaaatggagacatgatcccatctggtgttattcaagctgaaaatgttatgattgac
ggttcaggagttggagatatcggttcagttgttttacgtgaccgtaaagtgctatcagaa
gatggtattttcattgccgttatcacaatttctaagactgaacgtaaaatcgtcagcaaa
tctcgtgttcacactcgtggttttgtttatgttaaaacttcacgtgatttgatgcgtgaa
gctggtgagttggtcaacgaaactgttgataaatatctttctggaaaagaatttgattgg
gcagaaatcaaaggttctatccgtgatgctcttggaaaatttttatacgagcaaacaaag
cgtaaaccagtgattcttccagtagttatggaagcacgtcaacctcaagatttaaataaa
cgttacactaaaaaaaatcataataaaaaataa
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