Lactococcus lactis subsp. lactis KF147: LLKF_2093
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Entry
LLKF_2093 CDS
T01141
Symbol
ytgF
Name
(GenBank) 2,3-cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
llk
Lactococcus lactis subsp. lactis KF147
Pathway
llk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLKF_2093 (ytgF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llk03019
]
LLKF_2093 (ytgF)
Messenger RNA biogenesis [BR:
llk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLKF_2093 (ytgF)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
DUF2232
MG280
FixQ
FUT8_N_cat
SID-1_RNA_chan
Motif
Other DBs
NCBI-ProteinID:
ADA65668
LinkDB
All DBs
Position
complement(2155032..2156627)
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AA seq
531 aa
AA seq
DB search
MDIISIVLLVLLVVLVVAFIFYAQNIKKNKQDAESLFNEAENKANEVMANAKREAESLKM
EAEAFKKEARYTLREEEQKQRREIEDEFKQERQELKETEKRLKQREEILDRKDDTLTKKE
ENLDSKEENLVRKTDTLSKREEQLAHIEEKKRLELERISNLSTDDAREIILSETRDGLTK
EMAQIIRQSEEKAQVEADKRAKNIISLAIQRVSSDSVAEQTVSVVNLPDDGMKGRIIGRE
GRNIRTFEALTGIDVIIDDTPEAVVLSGFDPIRREIARMTLEQLVQDGRIHPARIEELVE
KNRKALDHKMREYGEQAAFEVGAHNLHPDLMKIMGRLHFRTSYGQNVLDHSVEVAHIAGN
LAGEMGENVALAKRAGFLHDIGKALDHEVEGSHVEIGTELARKYKENPIVINTIASHHGD
TEPLSNIAVLVAAADALSAARPGARRESIENYIKRLKDLEAISTSFEGVETAFALQAGRE
IRVMVKPEKLTDDQIVILARDVKNRIEDEMDYPGNIKITVIRETRAIDYAK
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggacattatttctatcgttctcttggtcttattggttgtattagttgtcgcatttatt
ttttacgctcaaaatataaagaaaaataagcaggatgctgaatctctttttaatgaagct
gaaaataaagcaaatgaggtgatggcgaatgctaaacgtgaggcggagtctttgaaaatg
gaggctgaagccttcaaaaaagaagcccgttacacccttcgtgaagaagaacaaaagcag
cgtcgtgaaatcgaagatgaatttaagcaagaacgtcaggagttaaaggagactgaaaag
cgcctaaaacaacgtgaagaaatcttagaccgtaaggatgataccttaacgaaaaaagaa
gaaaacttagattctaaagaggagaacctcgttagaaaaactgatacgctcagtaagcga
gaagaacaattagcgcatattgaagaaaagaaacgactagaattggagcgtatttcaaat
ttgagcacagatgatgctcgtgaaattattttgagtgaaactcgagatggtttgacaaaa
gaaatggctcaaattattcgtcaaagcgaagaaaaagctcaagttgaagcagataagcga
gctaaaaatattatctcacttgctattcaacgcgtttcatctgattctgtagctgaacaa
actgtttcggttgtcaatttaccagacgatggtatgaaaggtcggattatcggtcgtgaa
ggtcgtaatattcgtacttttgaagctttgactgggattgatgtcatcattgatgatacg
ccagaagcagttgtactttcaggatttgacccaattcgtcgtgaaattgctcgtatgact
cttgaacaattagttcaagatggccgaattcatccagcgcgaattgaagagttggttgag
aaaaaccgcaaagcacttgatcataaaatgcgtgaatatggtgaacaagcagcctttgaa
gttggggcgcataacttgcatcctgacttgatgaagattatgggacgtttgcatttccgt
acttcatatggacaaaatgtacttgatcactcagtcgaagttgctcatattgctggtaat
ttggctggcgaaatgggagaaaatgtggcacttgctaaacgtgcaggtttcttgcatgat
attggtaaagcacttgaccatgaagttgagggaagccacgttgaaattggaacagaactt
gcgcgtaagtacaaggaaaatccaattgtcatcaatacaattgcgagtcaccacggtgat
acagaacctttgagtaacattgcggtacttgttgcagcggctgatgctttgtcagcagca
cgtccaggagctcgtcgtgaatcaatagaaaattacatcaaacgtttgaaagaccttgaa
gcaatttcaacaagctttgaaggtgtggaaacagcctttgccttgcaagctggacgcgaa
attcgtgtaatggttaaaccagaaaaattaacggatgaccaaattgtgattttggcgcgt
gatgtgaaaaatcgaattgaggatgaaatggattatcctggtaatatcaagattactgtt
atccgtgaaactcgagcgattgactatgcaaaataa
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