Lutzomyia longipalpis: 129795484
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Entry
129795484 CDS
T10428
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lll Lutzomyia longipalpis
Pathway
lll03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lll00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129795484
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lll03019
]
129795484
03041 Spliceosome [BR:
lll03041
]
129795484
Messenger RNA biogenesis [BR:
lll03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129795484
Spliceosome [BR:
lll03041
]
Complex B
Other components
Prp19-related factors
129795484
Complex C
129795484
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_10
TPR_15
RPN7
ARM_TT21
ARM_TT21_C
PPR
SF3A3
DHR-2_Lobe_A
DUF5677
Motif
Other DBs
NCBI-GeneID:
129795484
NCBI-ProteinID:
XP_055692783
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Position
4:2537524..2542518
Genome browser
AA seq
856 aa
AA seq
DB search
MQQTESLNIDLEVDEEDVPFEEEILRNAYSVKHWLRYIDHKKKAPRYGVNIVYERALKEL
PGSYKIWYNYLKTRRKQVRGRCITDAVFEEVNNAFERSLVFMHKMPRIWMDYCTFMTMQC
KITRTRQIFDRALRALPITQHHRIWPLYLDFLQSFNIPETAVRVYRRYLKLFPENAEEYI
EYLTSVDRLDEAAQQLASVVDNENFVSKHGKSNHQLWNELCELISKNPDKVHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFSQVFDAYAQFEE
LNLKKWMEEASENPSEDTDVNIEIRFARFEYLMERRLLLLNSVLLRQNPHNVPEWHKRVK
LFEGKPTEIIKTFTEAVQTVQPRLAVGKIHTLWVEFAKFYEANGQIEDARVVMEKATQVD
YVKVDDLASVWCEWAEMEIRQENFDEALAIMHRATAMPKKRAAYHDEKEPVQMRVYKSLK
VWSMYADLEESFGTYKSCKAVYDRIIDLRICTPQIIINFGMFLEEHNYFEEAFRAYEKGI
ALFKWPYVYDIWNTYLTKFLQRYDGSKLERARDLFEQCLEFCPPEFAKCFYLLYAKLEEE
HGLARNAMAVYERGTGGVEASEQAAMFNIYIKKAAEIYGLPRTRQIYEKAIEVLPEESAR
EMCQRFAEMETKLGEVDRARAIYAHCSQMCDPRVTMDFWNAWKEFEVRHGNEDTMREMLR
IRRSVQATYNTQVNMMAAQMTSSAVGGTVADLAPGAKDGMRMLEAKAIEMNAEGAKSNGV
STAAGSNIMFVRGETQGLPQGEKVVNPDEIDIGEESEEEEEGDEDGEEVNIPIQQKSIPA
KVFGGLKKDDEEEEEN
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgcagcaaacagaatcactaaatattgatcttgaagttgatgaagaagatgttccattt
gaggaggaaatcttgcgaaatgcgtactccgtgaagcactggctgaggtatattgatcac
aagaagaaagctccacggtatggggttaatattgtctatgagagagctctaaaggagctt
ccgggctcatataaaatctggtacaattacctgaagacacgccgaaagcaggttcggggg
cgctgtattacggatgctgtttttgaggaggttaacaatgcctttgaacgttccctggtg
tttatgcacaaaatgccacgaatttggatggattattgcacatttatgacgatgcagtgc
aaaataacgcgtacacggcagatcttcgatagagcccttagggcactaccaattacccag
catcatcgtatttggccactctacctggattttctgcagagcttcaatatccccgagaca
gctgtaagggtgtatcggcggtatctcaaactatttccggagaatgctgaggagtacatt
gagtacctcacaagtgtggatcgtctggatgaggcagcgcaacagttggcgagtgttgtg
gataatgagaattttgtgtcaaagcatgggaaatcaaatcatcagctgtggaatgaactg
tgtgagcttataagtaagaatccggacaaggtgcattccctgaatgttgatgcaatcatt
cggggtgggttgaggcgctacacagaccaattggggcacctatggaattccctggctgac
tactacgtccgtagtgggctgtttgaacgtgccagagacatctacgaagaagcaattcag
acagttaccactgtgagggatttttcgcaggttttcgatgcatatgcccaatttgaggag
ctgaatctcaagaaatggatggaggaggcttcggaaaatccctcagaggacaccgatgtg
aacattgagattcgttttgcacgatttgagtatctcatggagaggcgtctgttgctcctg
aatagtgtgttgttgcgtcagaatccccacaatgtccccgaatggcataaacgggtgaaa
ttattcgaggggaaacccacggagattatcaaaaccttcacggaggccgtgcagacagtt
cagccacgcctggctgtggggaagattcacacactctgggtggaatttgcgaaattctac
gaagccaatgggcagattgaggatgcgcgtgtggtgatggagaaagccacgcaggtggac
tatgtcaaagtggatgatttggcgtcggtgtggtgcgaatgggctgaaatggagattcgt
caggagaactttgatgaagctctcgccatcatgcatcgtgccacggctatgccgaagaaa
cgtgctgcgtaccacgatgagaaggaacccgtgcagatgcgcgtgtacaaatccctcaaa
gtttggtcaatgtacgccgatctcgaggaatcctttggcacctacaaatcctgcaaggcg
gtctacgatagaatcattgatttgcgaatttgtacgccgcaaattatcattaattttggg
atgttcctggaggagcacaactacttcgaggaagccttcagggcatatgagaaaggtatt
gccctatttaaatggccctacgtgtatgacatctggaacacgtacctaacgaaattcctc
cagcgctacgatgggagtaaattggaacgtgcacgagatctctttgagcaatgcttggag
ttttgtccgccggaattcgccaagtgcttctacctgctctatgcgaagctcgaggaggag
catgggctagcgaggaatgccatggcggtgtatgaacgtggaactggtggtgtggaagca
tctgagcaggcggctatgtttaatatctacatcaagaaggcggctgaaatttacggactc
ccccggacgaggcagatctacgagaaggcaattgaggtgttgccggaggagagtgcccgg
gagatgtgtcagcgttttgcggagatggaaacgaagctgggtgaagtggatagagcacga
gcaatctatgcgcattgcagtcaaatgtgtgatccacgtgtcacgatggacttttggaat
gcctggaaggagtttgaggtacgtcatggcaatgaggacacaatgagagagatgttgcgt
atccgacgctccgtgcaggccacttacaacacacaggtgaatatgatggctgctcagatg
accagctcagctgtagggggcacagtggcggacttggcaccgggtgcaaaggacggtatg
cgtatgctggaggcgaaggccattgagatgaatgctgagggagcaaaaagcaatggcgtg
tcgacggcagctggtagcaatattatgttcgtgcgcggtgagacgcaagggttgccacag
ggtgagaaggtggttaatcccgatgagatagacattggggaggagagcgaggaggaggaa
gagggcgatgaagatggggaggaggttaatattccaattcagcagaaatcaattccagcc
aaagtgtttggtgggctcaaaaaggacgacgaagaggaggaagagaactga
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