Lactococcus lactis subsp. cremoris MG1363: llmg_0606
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Entry
llmg_0606 CDS
T00475
Symbol
recJ
Name
(GenBank) single strand DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
llm
Lactococcus lactis subsp. cremoris MG1363
Pathway
llm03410
Base excision repair
llm03430
Mismatch repair
llm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
llm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
llmg_0606 (recJ)
03430 Mismatch repair
llmg_0606 (recJ)
03440 Homologous recombination
llmg_0606 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llm03400
]
llmg_0606 (recJ)
DNA repair and recombination proteins [BR:
llm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
llmg_0606 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
llmg_0606 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
llmg_0606 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
ssDNA-exonuc_C
DHH
DHHA1
DUF4254
HTH_psq
HTH_40
Motif
Other DBs
NCBI-ProteinID:
CAL97206
UniProt:
A2RIV9
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All DBs
Position
593538..595766
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AA seq
742 aa
AA seq
DB search
MIKAKYDWKLDETVLSEDFLKISKKHKLDELTSRVLYQRGIHDESEIEKFLKPNLEDLHD
PFLLHDMEKATQRILSAIEQGENILIYGDYDADGMTAASVMKSALDELGAEAQVYLPNRF
TDGYGPNLDVYQYYINNENINLIITVDNGVAGVEAIAWAQENGVDVIITDHHSMPDQMPN
AYAIIHPEHPESQYPFKYLAGVGVAFKVACALLEYAPREMLDLVAIGTIADMVSLTDENR
ILVAHGLKVLAQTERAGLQELMIYAGVDFDKVTEETVGFQIAPRLNALGRLDDPNPAIEL
LTGWDEDEAHEIAKMIDQKNSERKDIVEKIHNEALAMLTDEPVQILYHKDWHKGVLGIVA
GRLLEQIHKPVIMLAEEEGILRGSARSIDSFDIFKALNAHRELFIAFGGHKQAAGMTLAL
ENVEAVKKAMSDFVVDNHLDLSKKSPLEVADRCHLDEISLATINNLAKLAPFGMDNPKPR
FLVEDYKVIRSRSMGKDNAHLKLKIQEEKQQIDAVYFQHGSEELEFEQAETKLVVTLSSN
SWNGNTSLQLMIEDADSIGVELLDIRSRQISIPKEANIFSQNQLKHGIMEDVLVIEETPV
DLAGLSVLEEAVSKAASDDFKIIYFKNKITDSYYLTGSGTREQFAKLYKAIYQFPEFDVR
YKLESLADYLNIPHLLLVKMIKIFEELEFVNIDNGLMTVNKAAQKREISESTIYQELEKI
VKMQELFALAPVKEIYQKLLEK
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagcgaaatatgattggaaattggacgagacagtcctttcggaagattttcta
aaaataagcaaaaaacataaattagacgaattaacaagtcgagtgctttatcaaagaggg
attcatgatgaatctgaaattgaaaaatttttaaagccgaatttggaagatttgcatgac
ccatttttgcttcacgacatggaaaaagcaacacaaagaattttatcagctattgaacaa
ggcgaaaatattctgatttatggggattatgatgctgatggtatgacagctgcttctgtc
atgaaatctgctcttgacgaattaggcgccgaagctcaggtttacttaccaaatcgattt
actgacggttatggtccaaaccttgatgtttatcaatattatattaacaatgaaaatatc
aatcttattatcactgtggataatggggtagcaggggtggaggcaatcgcttgggctcaa
gaaaatggagtggatgtcattattactgaccaccattcaatgcctgaccaaatgcctaat
gcctatgccattattcatccagagcatccagaaagtcaatatccttttaaatatttggcc
ggtgttggagttgcttttaaagtcgcctgtgccctcttagaatatgcaccccgcgaaatg
ctagatttggtggccattgggacgattgctgatatggttagtttaactgacgaaaatcga
attttagtcgctcatggtcttaaagttcttgcccaaacagaacgtgcgggtttgcaagaa
ttaatgatatacgccggcgtcgactttgacaaggtcaccgaagaaactgtcggttttcaa
atcgcgccacggttaaatgctttaggacggcttgatgaccctaatccagcaattgagtta
ttaacaggttgggacgaagatgaagctcatgaaattgctaaaatgattgaccaaaaaaat
tctgagcgaaaagatatcgtggaaaaaatccacaatgaagctctagcaatgttgacagat
gagcctgtccaaattttatatcacaaagattggcataagggtgttttaggaattgtggct
gggcgtttattggaacaaatccataaaccagtaattatgctcgccgaagaagaggggatt
ttgcgcgggtctgctcgctcaattgatagttttgatatttttaaagcactaaatgcccac
cgcgaactttttattgcttttggagggcataaacaggcggcggggatgactctagctctg
gaaaatgttgaagcggttaaaaaagcaatgagtgattttgttgtggataatcatttagat
ctttctaaaaagagtccacttgaagttgcggatcgctgtcatttggatgaaatttcactt
gctactattaataatttagcaaaattagccccttttggtatggataatcccaaaccgcga
ttcttagtagaagattataaagtcattcgaagtcgtagcatgggcaaagataatgcacat
cttaaattaaaaattcaagaagaaaagcaacaaattgatgccgtttattttcaacatggc
tcagaagagctagaatttgaacaagccgaaactaaacttgtggtgacactttcaagtaat
agttggaatgggaacaccagtcttcaactgatgattgaagatgccgattcaataggtgtg
gaactccttgatatacggagcagacaaatttctatccccaaagaggctaatattttttct
caaaatcagctaaaacatggtataatggaagatgtgcttgtcatcgaagagacacctgta
gatttagcaggtttgtcagtattagaagaagctgtcagtaaagcagcatcggatgatttt
aaaataatctattttaaaaataaaatcactgatagctattatttaacaggaagtggaaca
cgtgaacaatttgcaaagctctataaggcgatttatcaatttccagaatttgatgttcgt
tataagcttgagtctcttgcagattatttgaatattcctcatctcttgcttgtcaagatg
ataaaaatctttgaagaacttgaatttgtcaacattgacaatggcctaatgaccgttaat
aaagcggctcaaaaacgtgaaatttctgaaagtacaatttaccaagaattagaaaaaatt
gtaaaaatgcaagaactctttgccttagcgccagttaaagaaatttatcaaaaattatta
gaaaaataa
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