Lactococcus lactis subsp. cremoris NZ9000: LLNZ_06745
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Entry
LLNZ_06745 CDS
T02131
Name
(GenBank) putative exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lln
Lactococcus lactis subsp. cremoris NZ9000
Pathway
lln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LLNZ_06745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lln03019
]
LLNZ_06745
03016 Transfer RNA biogenesis [BR:
lln03016
]
LLNZ_06745
Enzymes [BR:
lln01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LLNZ_06745
Messenger RNA biogenesis [BR:
lln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LLNZ_06745
Transfer RNA biogenesis [BR:
lln03016
]
Prokaryotic type
tRNA degradation factors
LLNZ_06745
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
Rho_RNA_bind
SPMIP11
Motif
Other DBs
NCBI-ProteinID:
ADJ60299
LinkDB
All DBs
Position
complement(1273756..1275759)
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AA seq
667 aa
AA seq
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MVQLSELASALKQTESKGVFSKHPKGFGFVHPEGETDKTNDIYIGQNETKFAMDGDKVTV
KVLYPKTEKRGASGQIIKINERAVVDTVGTYRSLSNRQAKALGYKGRIELFNDRISDTLY
IKQPLTGVQEEDVVSIKVTQYPTDTKAFEGKITQIIGHKGEVGLDILEVLYAMKIPQEFS
AETLAEAEAFSEELTQEDLQGREDYRNEITYTIDGEDSKDLDDAIHVKKLSNGHFELGVH
IADVSHYVTEGSSLNEEAYARATSVYVTDRVVPMLPVRLSNNLCSLNEAQERLTMSCLME
IDDKGKIITYKISPSVIKTTYRMTYSNVNKMIHQGQEGHREALEKYSKIADSIEVAVELH
EILETMRKDRGMIEFDESEAKIILDDEGYPIEIVKRDRDTAERMIESFMLMANETVALDF
QKKKLPSLYRVHETPKEKAFAKLMEAAAEAGFSLSSDSHQAINFFADEIKDTSFEKALTY
QLRHTMSTAVYSEKNTKHFGLAATNYTHFTSPIRRYPDLIIHRLLHLYPSDHSNRTKDEW
KERLPEIASHSSDMEHRAVVTERIIDAMKKAEYMLERIGEVYTGTITGVQKFGIFVALDN
TVEGLVRVPNLHTGTTEELEFDEEMSIIKGKKSETIYQVGKEIKIRVIAANKRKGTVDFE
QIAPEKN
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggttcagctatcagaattagcatcagcacttaaacaaacagaaagtaaaggagtattt
tctaaacatcctaaaggctttggttttgtacatccagagggtgagacagacaaaactaat
gatatctacattggtcaaaacgaaactaaatttgcaatggatggagataaggttactgtt
aaggttttataccctaagacagaaaaacggggggcaagcggacaaattattaaaatcaat
gaacgagcagtcgttgatacagttggaacttaccgttctttatctaatcgccaagccaaa
gctttgggatataaaggtcgaatcgaactctttaatgaccgtatttcagatactctttac
ataaaacagcccttaacaggagtacaagaagaagatgtagtaagtattaaagttactcaa
tatccaacagatactaaagcatttgaaggaaaaattacgcaaatcattggtcataaaggt
gaagttggccttgatatcttagaagttttgtatgctatgaaaattccacaagaattctca
gctgaaacattagctgaggctgaggcattttctgaagaattaacccaagaagacttgcaa
ggacgtgaagactatcgtaatgaaatcacttataccattgatggagaggattctaaagat
ttagatgatgcgattcatgttaagaaattatcgaatggacattttgaattaggggtccac
attgctgatgtcagtcattatgtaaccgaaggttcttctttgaatgaagaagcttatgcg
cgagcaacctcggtttatgtgactgatagagtagttccaatgttacctgtcagattgtct
aataacctgtgctcacttaatgaagctcaagaacggctaacaatgtcttgcctaatggaa
attgatgataagggcaagattatcacttataagatatctccatcagtcataaaaacaact
taccgcatgacttatagcaatgtgaacaagatgattcatcaggggcaagaaggacaccgc
gaagcattagaaaaatattctaaaattgctgattcgatagaagtagccgttgaacttcat
gaaattctcgaaacaatgcgaaaagacagagggatgattgaatttgatgagagtgaagca
aaaataattttagatgatgagggttacccaattgaaattgtaaaacgtgaccgtgatact
gcagaacgcatgattgaatccttcatgcttatggcaaatgaaactgttgctcttgatttc
caaaagaaaaaattaccttcattgtatcgtgtccatgaaactcctaaggaaaaagcattt
gctaaattgatggaagctgctgcagaagctggattttctttgagttctgactctcatcaa
gccataaatttctttgctgatgagattaaagatacaagttttgaaaaagccttaacttat
caacttcgtcatactatgtcaacagcggtttattctgaaaaaaatacaaaacattttgga
cttgcagcgactaactacacacatttcacaagtccaattagacgttatcctgacttaatt
attcatcgtttattacatttatatccttctgaccattccaaccgtactaaggatgaatgg
aaagaacgtttgcctgaaattgctagtcactcttccgatatggaacaccgtgctgttgtc
actgaacggattattgatgcgatgaagaaagcagaatacatgttagaacgtatcggtgag
gtttatactggtacgatcacaggagtacaaaagtttggtatttttgtagcactagataat
actgttgaaggtttagttcgagtaccaaatttacatactgggacaacagaagaacttgaa
tttgacgaagaaatgagtattattaaagggaaaaaatcggaaacaatttatcaagttgga
aaagaaataaaaattcgtgttattgctgccaataaacgaaaaggaacagtagattttgaa
caaatcgctcctgaaaaaaactag
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