Lineus longissimus (bootlace worm): 135483226
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Entry
135483226 CDS
T09977
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03030
DNA replication
llon03420
Nucleotide excision repair
llon03430
Mismatch repair
llon03440
Homologous recombination
llon03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
135483226
03420 Nucleotide excision repair
135483226
03430 Mismatch repair
135483226
03440 Homologous recombination
135483226
03460 Fanconi anemia pathway
135483226
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
llon03000
]
135483226
03032 DNA replication proteins [BR:
llon03032
]
135483226
03400 DNA repair and recombination proteins [BR:
llon03400
]
135483226
Transcription factors [BR:
llon03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
135483226
DNA replication proteins [BR:
llon03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
135483226
DNA repair and recombination proteins [BR:
llon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
135483226
MMR (mismatch excision repair)
135483226
DSBR (double strand breaks repair)
HR (homologous recombination)
135483226
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Rhabdo_glycop_CD
Motif
Other DBs
NCBI-GeneID:
135483226
NCBI-ProteinID:
XP_064619964
LinkDB
All DBs
Position
2:complement(25392721..25399272)
Genome browser
AA seq
613 aa
AA seq
DB search
MSMDLTCGAIEQLMTGHDVTSPILQIVGQRKIPGGPSDRYRLVLSDGVNFQSSAMLATHL
NHLIENGELDNYAVIKLEKFLCNTIQNEKAGGQRRVVILQDIAILARGCDVGDKIGNPVA
FKSGQPSVVPEQKPDLTKPDFASNRDPAPKPAPPANMNRGGNFYGNNALQKSPQTPGGTS
MRVHPIDSLTPYQNRWQIRARVSQKSGIRTWSNSRGEGRLFSVNFVDESGEIRATGFNDA
VDKFYELLEVGKIYYVSKGTLKTANKQYSSVNNDYEMTFNNETTIVPSDDDGSLPTVKFD
FCPIQNLGNVAANTTVDVIGVVKQAGDATTITSRSTNKEFTKRDLTIVDQSKVAVSLTLW
GSDAEKFDATGCPVLAVKGCKVSDYGGRSLSVLSSCTMMTNPDIREAHLLRGWYDNEGQN
EEFEKFQGDARSGGAGGTNWMLLRDVKGGNIGLGEKPDYFNIKGLLAGFRKDNCLYKACP
NKDCNKKVVDQGNAMFRCEKCNEEFGAFKWRMILSANVQDCTDDHWVTFFQETAEAVLGI
SAEQLGAFKTEDDTAFENVFQQAVWSQWTMKVRSKVEKYNDESRLKSICVNVNPVEYQTY
NQHLIDEIEKMAV
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgagtatggacctgacatgtggtgcgattgagcaacttatgactggccatgatgttact
tcaccgattttgcagattgttggccagaggaagatccctggaggaccatcggacagatac
aggctggtgctctcagatggcgtcaactttcaatcatctgccatgctggccactcatctc
aatcatctcatcgagaatggagaattggacaattacgcagtgatcaaattagagaaattt
ttgtgcaacactattcaaaatgaaaaagcgggaggtcaaagacgtgtggtgattttgcaa
gatatagcaattcttgcacgtggttgtgatgttggtgataaaatcggcaatcccgtagcg
ttcaaatcaggtcagccgagtgtcgtccccgagcaaaaacctgatctaacaaaacctgat
tttgcaagtaatcgggatccagccccgaagcctgcaccccctgcgaacatgaatagaggt
ggtaacttctatggcaacaatgcgttacagaaaagtcctcagactccaggtgggacttca
atgcgagtccaccctattgacagtcttacaccatatcaaaatagatggcaaatcagggcc
cgcgtcagtcaaaaatctggaatcaggacatggagcaattcgcgtggtgagggacggttg
ttctcagtcaacttcgttgatgagagtggggaaatccgggcaactggtttcaatgatgct
gttgataagttttatgaactgcttgaggttggcaagatttattatgtgagcaaaggaacc
ctgaaaactgccaataaacagtactcgtctgttaacaatgactacgagatgacgttcaac
aatgagacgactattgtaccatcagacgacgatggatctttaccgactgtcaaatttgac
ttttgtcccatccagaatctcggaaatgttgctgctaatacgacagtggatgtgatcggt
gttgttaaacaagcaggggacgcaacgacgattacatcaaggtcaacaaataaagaattc
acaaagagggatctgacaatagtggatcagtcaaaggttgctgtctccctcacattatgg
ggttctgatgctgagaaatttgatgcaactggttgtcctgtcctcgctgtaaagggttgt
aaggtgtcagattatggaggcaggtccctgtcagtgctgagcagctgtacaatgatgacg
aaccccgacatccgagaggcccacctcttgaggggttggtacgataatgaagggcagaac
gaagagtttgagaagttccagggagatgccagaagtggtggagcaggtggaacaaactgg
atgttgctgcgtgacgtgaagggtggaaacattgggcttggagagaaacctgattacttt
aatatcaagggattattggcgggatttagaaaggataactgtttatacaaggcgtgtccc
aacaaagattgcaacaagaaggttgtggatcaaggcaatgcaatgttccgatgtgagaaa
tgtaatgaagagtttggagcctttaagtggagaatgatattgagtgccaatgttcaagat
tgtacagatgaccattgggtgacttttttccaagaaacagccgaggcagttctgggtatc
tcggcggagcagctcggtgccttcaaaacagaggatgacaccgcatttgagaatgtgttc
cagcaagctgtctggtcgcaatggacgatgaaagtcagatcaaaggttgagaagtataat
gatgaatcgcgactgaagtcaatttgtgtgaatgtcaatcctgtcgaataccaaacgtac
aaccaacatcttatcgacgagatagagaaaatggctgtttga
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