Lineus longissimus (bootlace worm): 135486715
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Entry
135486715 CDS
T09977
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135486715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llon03019
]
135486715
03041 Spliceosome [BR:
llon03041
]
135486715
03009 Ribosome biogenesis [BR:
llon03009
]
135486715
03016 Transfer RNA biogenesis [BR:
llon03016
]
135486715
Enzymes [BR:
llon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135486715
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
135486715
Spliceosome [BR:
llon03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
135486715
Complex C
U4/U6.U5 tri-SnRNP related factors
135486715
Ribosome biogenesis [BR:
llon03009
]
Eukaryotic type
Pre-60S particles
Helicases
135486715
Transfer RNA biogenesis [BR:
llon03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
135486715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
AAA_22
HEPN_AbiU2
Death_3
Motif
Other DBs
NCBI-GeneID:
135486715
NCBI-ProteinID:
XP_064625845
LinkDB
All DBs
Position
4:complement(1784426..1792891)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADEDPFGDELFNVFDQKSSSDSKDASSDQPSDKEQGKGGPCKKSKASELLKKRSTAAAA
DVVELEDASPQSKKIKVTVEEDLSASEVLPRIQVHTVDTVESCTHEVAIYPGDEYVPLAL
PSTTPAKEYPFILDPFQKEALLCLENNQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIY
TTPIKALSNQKYRELFEEFQDVGLMTGDVTINPSASCLVMTTEILRSMLYRGSEIMKEVA
WVVFDEIHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICYLHKHPCHVV
YTEYRPTPLQHYIYPAGGDGLHLVVDENGEFREDNFNTAIACLSQAEEASKGGARGGRKG
GPKGESSCFKIVKMIMERNMAPTIVFSFSRKDCEGYALQMSKLDLNSDEEKVLVSEVFNN
AMDALSEEDKKLPQVEHVLPLLKKGIGIHHSGLLPILKETIEILFAEGLIKALFATETFA
MGLNMPARTVLFTTARKFDGREFRWISSGEYIQMSGRAGRRGIDERGIVVLMLDEKMSPG
AAKQVIKGQPSFLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQNYAAIPELFEKVK
KLENDYNSVVIPNEEQVSTYYKIRQQLDNLAKELMGYLTKPQYVLPFLQPGRLIKVVNGE
DDFDWGIVVNFQKKATQSKAPNPNPNETEAVYVVECLLHLTKESARNSNTANIKPCPPGE
KGEMQVVPIMLSLITAISTIRVYIPQDLRPLDNRQSVLKAIQEVKKRFDGILPVLDPIED
MNIKERGLKDIIKKTEAFEHRMYSHTLHKNPKLDELYSLYQKKMKVGQDIKASKQDLKKK
RSLLHMDELKCMKRVLRRLGYATAQDVIELKGRVACEISSCDELLATELLFNGVFNDITP
AQCCSLLSCFVFGEKANEMPKLTEELSGPLRIMRDTARRIARVSNEAKLEKDEESYLDSF
KPHMMDVIHAWCKGATFLQLCRMTDVFEGSIIRCMRRLEESLRQMVQAAKGIGNTELENK
FSEAITLLKKDIAFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgaagatccttttggggatgaattgttcaatgttttcgatcaaaaatcctct
tcagattctaaagatgcatctagtgaccagccgagtgataaagagcaaggcaaaggtggc
ccttgtaaaaaatcaaaggccagtgagctgctgaagaaacggagcactgctgctgcggca
gatgttgtggagttagaagatgcatctcctcaatccaaaaagattaaagtgacagtagag
gaagatctaagtgcgtcagaggtccttcccaggattcaagtccatacggttgatactgta
gagagttgtacacatgaggttgctatataccctggtgatgaatatgtaccacttgcactg
ccctcaacaacacctgcaaaggaatatccattcattctagatccatttcaaaaggaagct
ttgctctgccttgagaacaaccaatctgtccttgtttcggctcatacttcagcaggaaaa
acagtggttgcagagtatgcaatagcaatgtcattgagggacaaacagagggtcatctat
acaacacctataaaagctttgagcaaccagaagtacagagaactgtttgaagagtttcaa
gacgtgggtctcatgactggtgatgttacgattaacccatcagcgagttgtctggttatg
accactgagatcttgcgaagtatgttgtaccgaggttcagagatcatgaaagaggttgcc
tgggttgtgtttgatgagatccactacatgagagataaggagcgtggtgttgtctgggaa
gaaaccatcatcctcctgcctgataatgtacactatgtgttcctctctgctaccattcca
aatgccaggcagtttgctgagtggatctgctacttacataaacatccctgccatgttgtc
tacacagaatacagacctaccccactgcagcactacatttaccctgctggaggagatggc
ctgcaccttgtagtggatgaaaatggtgaattccgtgaagacaacttcaacacagccata
gcctgtctgagccaagcagaggaggcttcaaaagggggtgcaagaggaggacgcaaagga
ggccctaaaggggaatcaagttgttttaaaatagtcaaaatgatcatggaacgaaatatg
gcaccaacgattgtgttcagcttcagtcggaaggattgtgaaggatacgcgttacagatg
tcgaaattggatttgaattcagatgaagaaaaagtcttagtgtcggaagtcttcaacaat
gccatggatgctttatcagaggaagacaaaaaactaccccaggttgagcatgtgttacca
cttctaaagaaaggcattggcatccatcattccggtttactaccaatcctaaaggaaacc
attgagattctcttcgctgaaggcctcatcaaggcactgtttgccactgaaacctttgcc
atgggtttgaacatgcccgccaggacagtgctgttcacgaccgcaaggaagttcgatgga
cgagaattcagatggatttcctctggagagtacatccagatgagtggtcgtgctggtcgc
cgtggtattgacgagcgaggtatcgttgtcctcatgctggatgaaaagatgagtccagga
gcagcaaaacaagtcatcaaggggcaaccatctttcctgaacagtgccttccacttgaca
tacaacatggtgctcaatctgctcagagtggaggagatcaaccctgaatacatgttagag
aagtcattctaccagttccagaattatgcagccattcctgaactattcgagaaggtaaaa
aagctggagaatgattacaacagtgtggtgatacctaatgaagagcaagtcagtacttac
tacaagattagacagcagctcgataacctggctaaagaactgatggggtatctcaccaaa
cctcagtatgtgctgcctttcctgcagccaggacgtttgatcaaggtggtgaatggagaa
gatgactttgactggggtattgtggtaaacttccagaagaaagcaactcagagtaaggca
cccaatcctaatcctaatgaaactgaggcagtctacgtggtggaatgtttgctccacctc
acaaaggagagcgcgaggaacagtaacacagcaaacatcaaaccatgtccaccaggagag
aaaggagaaatgcaggttgttcccataatgctgagcctcatcaccgccatcagcacgatt
cgtgtgtacatccctcaagatctgcggcctcttgacaaccgacagagtgttctaaaggca
atccaggaggtgaagaaaaggtttgatggtattcttcctgtacttgatcccattgaggac
atgaacatcaaagagagaggtctcaaggatattatcaaaaaaactgaagcatttgaacac
cgtatgtattctcatacattgcataaaaaccccaagttggatgagctgtacagtctctac
cagaagaaaatgaaggttggtcaagatatcaaagccagtaagcaagatctgaagaagaaa
cgatccctgctccatatggatgagctcaagtgtatgaaacgggtgctacgtcggctaggg
tatgctacagcccaggatgtcattgagttgaagggcagggtggcttgtgaaatcagcagt
tgtgacgagctccttgctactgagcttctcttcaatggcgtcttcaatgatatcactcca
gcccagtgctgttccctactcagctgttttgtctttggagaaaaagctaatgagatgccc
aagttaacggaggagttatctggacctctcaggattatgcgggacacggcgaggaggata
gcgcgggttagcaatgaagctaagttggagaaagatgaagagagctacctggattccttc
aaacctcatatgatggatgtcatccatgcttggtgtaaaggagccacattcttacagctg
tgtagaatgacagatgtctttgaaggtagtatcattcgttgtatgagacggttggaagag
tccctgagacagatggttcaggcagcaaaaggcattggcaacacagaactggagaataaa
ttctcggaagcaataacactactgaagaaagacattgcctttgctgcgagtttgtatttg
taa
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integrated database retrieval system
