Lineus longissimus (bootlace worm): 135487914
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Entry
135487914 CDS
T09977
Name
(RefSeq) protein PAT1 homolog 1-like isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135487914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llon03019
]
135487914
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135487914
mRNA degradation factors
5'-3' decay
Decapping complex
135487914
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
135487914
NCBI-ProteinID:
XP_064628223
LinkDB
All DBs
Position
5:22099970..22114412
Genome browser
AA seq
855 aa
AA seq
DB search
MAESFFGFDAGGAPSGLGKGRNTKPLEGGSLLPATEDDEIDALNDETFGDGGVWDFDAAE
KADLGESFFDDDSRGFDSAYSTAEKQGREDEEYSEMPQMEQSLSALVVDDEDEINDPAIV
NMSKSRPIPKPIFDRKQNLDELFGPASPPGLLDTDDLVSPSHKNIWRPPDKDHFNFESPG
QQHYQGPVVVTAGRPPPPGLPNRNVPSEPKKGGAMTLEELERQMRDQTVPQQRQVSPPLG
GIPMPIGTPPHHHHMPIGTPPQLPQHQQRPFFYTPQAGHGQGPWISTPGPTPNRISPPQV
VPQQQIQAQMLSGFMNQPPPRGVRSESPFHPGGMPMRRTPSPTMSGPLPVDNRGMPLNLS
PAMIAKLYPHLLRTPVGQMRGGMQMNAPASARPGRISPPNHMNNSFMTNTPQGPPRMPQR
MPFTDPTHMRQQNRERWQDEQHDRSYYNNQNRGGGYQRGYRGEGDYRGNQGYRGRGGYHN
NSYHQHYDNEPREPEDEYANLMTQREKDWIIKIQMMQLTTDNPYVDDYYYTQYKIKLMAL
ERRRQRGGQGGDDKEPKLLLPQFAKVETSAYSPAQFEGSLGKLTASSVHNPRQIIDAKIR
AGDVEMKGGKYRQLLLYIEQIYNVLLQVDDLEKQVLALPPNEREALYTERRTKINQMFAK
LHCDSNAPEQFVMYMSIRKGKKLVNRMMPLLNKDQLVSIVLATLKNLPILIKKDVLDEVL
PDLYNHVSQVIKNAVMQDLVMFGLAMQNAAVPTSQTNPLMSALQNRFGVSAVCCMMSRAE
TIYVESPMDVDNSQQDQWSDFVIMIGETLSIANERTLTLPKPLERFHNLIAHFERVLSRN
VLSGLEDRLRAWTQG
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaagtttcttcggttttgacgctggtggtgccccttccggtttggggaaggga
aggaacaccaaacctcttgaagggggatcacttcttcctgccacggaagatgatgaaatt
gatgctttgaatgatgagacgtttggagatggaggtgtttgggattttgatgcagctgaa
aaagcggacctaggtgaatcgttttttgacgatgatagtcgaggatttgactcggcctat
agtacagcagagaagcaaggcagagaggatgaagagtactccgagatgcctcagatggag
cagagccttagtgcgctcgtcgtcgacgatgaggacgaaatcaatgatccagctattgtc
aacatgtccaagagtcgacctattcccaagcctatttttgataggaaacaaaatctagac
gaactctttggtccggcgtcaccgccagggctactggacaccgatgacttggtgtctcca
agccacaagaatatctggcgaccaccggacaaggatcacttcaatttcgagagtcctggc
caacagcattatcagggtccagttgtagtgactgctggccgacctccacctccaggccta
ccaaacagaaacgtcccatcagaacccaagaaaggtggcgccatgaccttggaggagttg
gaacgacagatgcgtgatcagactgttccccagcaacgccaggtgtcaccaccgttggga
gggatacccatgccgattggaacgccccctcatcaccatcacatgccgattgggacaccc
cctcagcttcctcaacatcaacagaggccattcttttacacaccgcaagctggacacggg
cagggaccttggatttcgacccctggtccaactccgaaccgaatatcaccaccccaggtt
gtacctcagcagcagattcaggctcagatgctttctggcttcatgaatcagccaccacca
agaggagttcgaagtgagtcgcccttccacccaggaggcatgcccatgcgacgcaccccc
tcgccaacgatgtccggaccactgcctgttgataaccgtggcatgccactcaacctctcc
ccggccatgattgctaaactttatccacatttgctcagaactcctgttggtcagatgcga
ggtggcatgcagatgaatgctcccgcctctgccaggccaggaagaatctcgccgcccaat
cacatgaacaactcattcatgaccaatacccctcaaggacctcccaggatgccccagagg
atgccgttcaccgatccgacgcacatgaggcagcagaatcgtgagcgatggcaagacgaa
caacacgataggtcctattataataatcaaaatcgaggtggtggttaccaacgaggttac
cgaggagaaggtgactaccgtggcaaccagggttaccgaggccgtggtggttaccataac
aacagctaccatcagcattacgacaatgaaccgagggaacctgaggatgaatatgccaac
ttgatgacgcaacgtgagaaagattggatcatcaagattcagatgatgcagttgacgact
gataatccttacgttgatgactattattatacacaatataagatcaaactaatggcgtta
gagcgacggagacagcgcggtggacagggtggcgatgacaaggaacccaagttactccta
ccacagtttgccaaggttgaaactagtgcttatagccctgctcagtttgaagggtcactt
ggcaaactaacagcctcaagtgttcataatccacggcagattattgatgcaaagattagg
gcgggtgatgttgagatgaaaggcgggaaatatagacaactactgttatatatagaacag
atttataatgtattacttcaagtagatgatttagaaaaacaggtgcttgctctgccgcca
aacgaaagggaagctttatacaccgagaggcgtacgaaaatcaatcagatgtttgccaag
ttgcactgtgattctaacgcccctgaacagtttgtgatgtatatgtcgattagaaaggga
aagaagttagtcaataggatgatgccattattgaacaaggatcaacttgtgtccattgtt
ttggcgacactgaaaaatctaccaatccttatcaagaaggatgtactagatgaggtattg
ccagatctatacaaccatgtcagtcaagtgataaagaatgccgtaatgcaagacttggtg
atgtttggcctggcaatgcagaatgctgctgtccctacaagtcaaactaaccccctcatg
tctgcgctccaaaacaggtttggtgtgagtgctgtgtgttgtatgatgagtcgagccgag
acaatctatgttgagtcaccaatggatgtggataacagccagcaggaccaatggtcagac
ttcgtcatcatgattggagaaaccctgtcgatagctaacgagaggacactaactctacca
aaacctttagaaaggtttcacaaccttatcgctcattttgaacgggtgttgagtagaaac
gtattatcaggactagaagaccgcctgcgtgcttggactcaaggatga
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