Lineus longissimus (bootlace worm): 135489833
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Entry
135489833 CDS
T09977
Name
(RefSeq) probable ATP-dependent RNA helicase DDX56 isoform X1
KO
K14810
ATP-dependent RNA helicase DDX56/DBP9 [EC:
5.6.2.7
]
Organism
llon
Lineus longissimus (bootlace worm)
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
llon03009
]
135489833
Enzymes [BR:
llon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135489833
Ribosome biogenesis [BR:
llon03009
]
Eukaryotic type
Pre-60S particles
Helicases
135489833
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
Phage_YunG-like
CRISPR_Cas9_WED
Motif
Other DBs
NCBI-GeneID:
135489833
NCBI-ProteinID:
XP_064631462
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All DBs
Position
6:complement(19468565..19478250)
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AA seq
571 aa
AA seq
DB search
MIPNKIMADSESIFQKNVVHFHEMGLDDRLLKAISSLGWSEPTLIQEKAIPLAMEGKDVL
ARARTGSGKTAAYGIPLIQKILEAKRVAREQSTKALVMTPTKELCNQAYKNIKELTTNCS
REVRCVDISGQSPLEAQRPLLMEKPDIVIGTPSRILAHIAAKNLHLKSSLELLVIDEADL
VFSFGYEQDVKSILSHLPKIYQAFLMSATLSDDVKSLKKLVLHNPVILKLEESQLPETSQ
LTQYHIKCEEEDKFVLIYALFKLKLIRGKSILFVKNVDRCYRLKLFLEQFAIPSCILNSE
LPINSRCHIVNQFNEGLYDTIISSDENIVQNPEVKKEDKYKKKRKQDKEFGVSRGIDFQF
VSNVINFDFPVDVDSYIHRVGRTARGDNKGTALSFVSIKEMPLLQQVEAALSDTATEGEN
VFKPYQFKMDEIDGFRYRARDAMRAVTKIAVREARLKEIKSEILNSQKLKSYFEDNPRDL
QLLRHDKSLHTAKVQQHMKNVPDYLVPPTLKRLRHGPIRDRQERSNKPRRGGGAHRGRSK
GQMKFSKTKADPLKSFEFAGLRGGKKKKKSS
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgataccaaacaaaataatggccgattcggaatcgatatttcagaaaaacgtggttcat
tttcatgaaatgggactcgatgatcgtcttctgaaggcgatctccagtctcggatggtcc
gaacccacactcattcaagaaaaggccatcccactagcaatggagggcaaggatgtccta
gcaagggcccggactggatcagggaagactgcagcgtatggtatccccttaatacagaag
atcctcgaggctaagagggttgcaagggaacagagcaccaaagctttggtgatgacaccg
acaaaggagttatgtaatcaagcatacaagaacatcaaggagttgacaacaaattgttca
agagaagtaaggtgtgtggacatatcaggccaatctccattagaggctcagaggcccctg
ctgatggaaaagccagacattgtgataggaaccccaagtcgaatcttagcacacattgca
gccaaaaatctccacttaaaatcctcgttagaacttctcgtgattgatgaagctgatctt
gtcttctcattcggttatgaacaagatgtgaagtctattctgagtcaccttcccaaaatc
tatcaagcatttcttatgtcagctactctcagtgatgatgtcaagtccctcaagaaatta
gtccttcataaccccgtgatcctgaagcttgaagaatcccagctcccagagaccagtcag
ttgacacagtaccacattaaatgtgaagaagaagacaagtttgtcttgatctatgcatta
ttcaaattgaagttaatacgaggcaagtccatcctatttgtcaagaatgtggacaggtgc
tataggttaaagttgtttctggagcagtttgccatcccatcctgcatcctgaactctgaa
ctacccatcaactcccggtgccatatagtgaaccagttcaacgagggattatacgacaca
atcatatcctcagatgagaacattgtgcagaaccctgaggtcaaaaaggaggataaatac
aagaaaaagcggaaacaagacaaagagtttggagtttctcgtggtatagacttccagttc
gtctccaacgtcatcaactttgacttcccagttgatgttgattcttacattcatagagtt
ggcagaactgcccgtggtgacaacaagggaactgcactgtcatttgtgagcataaaggaa
atgcccttactgcagcaagtggaagcagctctatcagataccgcaacggagggtgaaaat
gtgttcaagccgtatcagtttaaaatggacgagattgatgggttcagatacagagcaagg
gatgcaatgagagcagtcaccaagattgcagtaagggaggccaggttgaaagaaatcaag
tccgagatcctaaactcgcagaagctcaagtcgtactttgaggacaacccaagggactta
cagctactgcgccatgacaagagtctccacacagccaaggtgcagcagcatatgaagaat
gtaccagattatctagtgccacctacactaaagaggttgagacatggtcctataagagat
cgtcaggaaaggtcaaacaaaccacgtcggggtggtggcgcacacagaggaaggtcaaag
ggacagatgaaattcagtaaaacgaaagccgatccattgaagagttttgaatttgctggt
ctgagaggaggaaaaaagaaaaagaaatcatcttaa
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