Lineus longissimus (bootlace worm): 135491041
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Entry
135491041 CDS
T09977
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
llon
Lineus longissimus (bootlace worm)
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
llon03016
]
135491041
Enzymes [BR:
llon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135491041
Transfer RNA biogenesis [BR:
llon03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135491041
Prokaryotic type
tRNA splicing ligases
135491041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
135491041
NCBI-ProteinID:
XP_064632747
LinkDB
All DBs
Position
7:complement(2090870..2096796)
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AA seq
505 aa
AA seq
DB search
MPRTYQEELKFLEKLTPNSWRIKKDFVPNMNVEGVFYVNDMLERLMFDELRHSCNAKGFG
GFLPGIKQIANVAALPGIVGRSVGLPDVHSGYGFAIGNMAAFDYNDPKAVVSPGGVGFDI
NCGVRLLRTNLSEKDVLPVKEQLAQSMFDHIPVGVGSKGVIPMTAKDLEEALEMGMDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIYDD
FAASKMGIEYCGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDHIDVNDRQLACARIHS
PEGQDYLKGMAAAANYAWVNRSSMTFLSRQSFAKMFQTTPDDLDMHVIYDVSHNIAKVEE
HFMDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTETGME
ETFGSTCHGAGRALSRAKSRRNLDYQSVLTKLEDQGISIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGLSKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgccaagaacataccaggaggaactgaagttcctcgagaaactcaccccaaacagttgg
aggatcaagaaagattttgttccaaatatgaatgttgagggtgtattttatgttaatgat
atgttggagcgcttgatgtttgatgagctgcgccattcttgtaacgccaaaggctttggt
ggattccttcctgggatcaaacagatcgcaaatgtggctgcactacctggcattgttggg
cggtccgtgggtttaccagatgttcactctggttatggctttgccattggcaacatggcg
gctttcgattacaacgatccaaaagcagtggtatccccgggtggcgtgggattcgacatc
aactgtggcgtacgtctgctgcggacgaacctctcagagaaagatgttcttcctgtcaaa
gaacagttggcccagagtatgtttgaccatattccggtaggagtcggatcaaagggcgtc
atcccaatgactgcaaaagatttagaggaggcattagagatgggtatggactggtctctc
cgtgaagggtatgcctgggctgaggacaaggaacattgtgaggaatatggccgcatgcta
caagctgatccttctaaagtcagcgcaagggcaaagaagagaggtctgcctcagttggga
actctaggtgctggtaaccattatgccgagatccaagtggtggatgaaatctacgatgat
tttgctgcgtctaagatggggattgaatactgtggtcaagtctgcgtcatgatccacagt
ggaagtagaggattcggtcaccaggtggctacagatgccttagttgccatggagaaagct
atgaagcgagaccacatcgatgtgaatgaccgtcagttagcatgtgctaggatccattcc
cccgaaggacaggactacctaaagggcatggcagcagcagctaactatgcctgggtgaac
agaagtagtatgaccttcctatcaagacagtcctttgccaagatgttccagactacccct
gatgacctcgatatgcatgttatctatgatgtatcccataatattgccaaagtcgaagag
cacttcatggatggcaaacagaagacgctgttggttcatcggaaaggctcgacgcgggcc
ttccctccacatcatccacttataccagttgattatcagttgactggacaacctgtactg
attggtgggaccatgggaacgtgtagttatgtcctgactggaactgagactgggatggag
gagacgtttggctcgacatgtcacggagcagggcgtgccttatcacgcgccaagtcaagg
aggaacctggattatcagagcgtcctgacgaaactagaagaccagggaatctcaatacgc
gtggcttctcctaaactagtcatggaagaggccccagaatcttataagaatgttacagat
gtcgtcaatacgtgtcatgcggctggcctcagtaagaaggcaatcaaactgcgacccatt
gctgtgattaaaggataa
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