Lineus longissimus (bootlace worm): 135492008
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Entry
135492008 CDS
T09977
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6-like isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03015
mRNA surveillance pathway
llon03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135492008
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
135492008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llon03019
]
135492008
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
135492008
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
CTU2
Motif
Other DBs
NCBI-GeneID:
135492008
NCBI-ProteinID:
XP_064634130
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Position
8:complement(4829768..4844010)
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AA seq
631 aa
AA seq
DB search
MADGVDIDIYENLEDFNQQEGEFNHHEGIDLYDDVITAPSGEGEPVATPKPAPTSQTQVP
TGAWTGKRIALYVGNLTWWTTDQNLTDAISSLGVTDLVEIKFYENRANGQSKGFAVVTLG
SDASYKTVMDRLPGKELHGQNPVVTQCNRNALNQFEQQSRKPDQQGPGKAFRDHDGGRGN
GPSMGRGRGFVPRGPRPSVSPGPQGPPGPHNNHNHGPPQHHGPPPGHHGGPHGPPPPRPG
PPPHHHQGPPPPRPGPPPPGHMGGPPPGMPPRGPPPGGPRGPPPGQDPRGPPPGPPRPDW
DHRPPAPFHPGGPPPNHHHPGGPPPGHPGGPPPPRPGPPPQNPYPGPPPPRQPGPPGHPP
HMGPPPQGPPPPHVVPPAPHVNPAFFPPASQPPPVQAPPPVQPDPYGRPPPVSYPSDPYA
HRPPPESTVDAYGRPVATYTGDPYDRAAVPERHDRDRDPLTPSVTEQEFEDMLEQNKTIM
RSAIDKVVKDARQGKYASAIETLVTAISLIKQSKIANDDRCKICITSLQDTLHGVESKLY
GSEVSSRDRRSRSWSRERERDRHDDREKRSRHRSRSREREKASTRSRDRSERSERYHEER
SSRHRDGDRDRERDRERDSERYSTSSSSRRH
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggcgtggacatcgatatttacgaaaacttagaagattttaaccagcaagaa
ggtgaattcaaccatcatgaaggcattgacttgtatgatgatgtgatcacagccccctct
ggtgagggtgaaccagttgcaacacccaagccagcccctacatcgcaaacacaagttccc
actggagcgtggacaggcaagaggattgcattgtatgttggaaacctgacgtggtggaca
acggatcaaaacttgacggatgccatctccagtttgggagtcacagatctggttgagata
aaattttatgaaaacagagctaatggacagtccaaggggtttgccgttgtcacgttgggg
tcagatgcctcgtataagacagtcatggaccgcctgccaggaaaagagctccatggacag
aatccagtagtcacacaatgtaataggaatgctctcaatcagtttgagcagcagtctcga
aagccggaccaacagggcccaggtaaggctttccgggaccacgatggcgggaggggtaat
ggtccatcgatggggcgaggacgtggatttgtacctagaggacccagaccgtcagtatca
cctggtccacaaggccctcctggtcctcataacaaccataaccatggtccaccacaacat
cacggcccaccaccagggcaccatggtggtcctcatggccctccgcctccaaggccaggc
ccgccaccacaccatcatcaaggtccacctccaccacgtccaggcccaccaccaccagga
catatgggaggaccaccacccggcatgcctccaaggggccctcccccaggtggacctaga
ggaccacccccagggcaggacccaagaggacctcctccaggacccccaaggccagactgg
gaccacaggccaccggcgccattccatccgggagggccgcccccgaaccatcatcatcca
ggaggtccaccacctggtcaccctggaggaccaccacccccgaggccgggacctccgcct
cagaatccataccctgggccaccaccacccagacagccaggtccccctggtcacccccca
cacatgggaccccctccacaaggtccaccacccccacatgttgtgccaccagcgccacat
gttaacccagcattctttcccccggcttcacaaccaccaccagtgcaggcccctccgcct
gttcagccagatccctatggccgaccaccgccagtgtcctacccgagcgatccgtatgcg
cacaggcctcctccagaaagcaccgtagatgcgtatggtcgtcctgtggcaacttatacg
ggtgacccgtatgatcgggcagcagtcccagagagacatgatcgtgaccgtgatccactg
acaccatctgtcaccgaacaagagtttgaagacatgcttgagcagaataaaacgattatg
cgcagtgcaatagacaaggtggtcaaggatgcaagacaaggaaaatacgcgagtgcgatt
gagacgctggttactgccatctcgttgatcaaacagtcaaagattgccaacgatgacagg
tgtaagatctgcatcacgtcactccaggatactctacatggagtcgagtccaaattatat
gggtcagaagtgagttcccgagatcgacgttcaaggtcatggtcacgcgaacgtgaacgc
gatcgtcatgatgaccgcgagaaacgcagcaggcatcgctcaaggagtcgcgaacgtgaa
aaagcgagcacgcgtagtcgtgatcgcagtgaacgtagcgaacgttaccacgaggagagg
agtagtcgccatagagacggtgatcgcgatcgagagcgtgatcgggagcgagatagtgag
cgctacagtactagtagcagtagcagaagacattga
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