Lineus longissimus (bootlace worm): 135492109
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Entry
135492109 CDS
T09977
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135492109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
llon03000
]
135492109
03019 Messenger RNA biogenesis [BR:
llon03019
]
135492109
04121 Ubiquitin system [BR:
llon04121
]
135492109
Enzymes [BR:
llon01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
135492109
Transcription factors [BR:
llon03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
135492109
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135492109
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135492109
Ubiquitin system [BR:
llon04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
135492109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
Nup35_RRM_2
Vasculin
zf-UDP
Torus
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
135492109
NCBI-ProteinID:
XP_064634365
LinkDB
All DBs
Position
8:complement(3806640..3819902)
Genome browser
AA seq
749 aa
AA seq
DB search
MSVGEEQTECPLCMEPLELDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKQYPEDP
AEFKPLTEDELQRIKKERRQKDLQRKQKAAENRKHLANVRVVQKNLVFVVGLSQRLADVE
VLRKHEYFGKFGKIHKVVINQSTSYAGAQTHGPSASAYVTYHKPEDALKAIQAVNNVYVD
GRTLKSSLGTTKYCSHFLKGSQCPKLDCMYLHELGEEAASFTKEEMQQGKHQEYEQKLYE
TFMNTQNAAHHSAKTAQQPPQHPPLSHTPPQQQQTQQHLQQNARKKPASPPTVTQQSAPV
CQHNVPPNTNKEAWPSLQSGTTSKPERLTNGNKPPLMTVPQPQKPDTPPLQNSNHRAPGA
NLNRHRGHETNSNGKPVDRPPTNSPSPVAEVKAHSPPVSVPQLTPNPIGANRKPFFDNSQ
DHLSLFSGNGFPPRPLHKPPVQPSPIAETIPTATEIPDTIPVSSSADWQTAFGFTSSTTD
SHEDDLGFDPWNESTKALADLIEREQGQTQHQQNLHNSPRSAPPGFLPGLGNPFTINQPK
TDQIGGSKIMNLMASFSTGNTTVPQPPGFAALPPNNTCHDVLSDIGLSGKENGPMNNDHD
VFNTKDWQEGLRALLPNINISFGAPPAYPTSAPRSPPHMIQPQQKGWPTQTRSADLSWMS
TDPAIVTSGSVTDANSLSEDPPHWMKSLQQLTEIDSLPGQNHRLPFVQNFQIRGGHSWGQ
PAQNPPPGFQSQIIPPSPVGESQVAEGFH
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttggtgaagaacaaactgagtgtccactctgtatggaaccgttggagttggat
gacatcaactttttcccatgcacatgtggatatcagatttgcagattctgttggcacaga
ataagaacagatgaaaacggtctgtgtccagcttgcagaaagcaatacccagaagaccca
gcagaatttaagcctctcacagaagatgaattgcagagaataaagaaagaacgccgccag
aaagaccttcagagaaaacagaaggcggcagaaaacaggaaacacctcgcaaatgtcaga
gttgtacaaaagaacttagtatttgttgtaggtctttctcaaagattagccgatgtagag
gtgttgaggaaacatgaatatttcggcaagtttggaaaaattcacaaagttgtgataaat
caaagtacttcatatgctggtgcacaaacgcatggtccgagtgctagtgcttatgttaca
taccataagccggaggatgcattgaaggcgatacaggctgtgaataatgtttatgtcgac
ggtcgcacgctgaaatcttccctgggaactactaaatattgtagtcatttcctaaaaggt
tctcagtgtccaaaactagattgtatgtatttacatgaactgggtgaagaggctgctagt
tttaccaaagaggaaatgcaacaagggaaacatcaagagtatgaacagaagttatacgag
acgtttatgaatacacagaatgctgctcatcatagcgccaagacggcacagcagccgccg
cagcacccgcctctgtctcatacaccgccacaacaacaacagacacaacagcacttacaa
cagaatgctaggaaaaagcctgcgtctccaccaacagttacgcagcaaagtgcgccagtt
tgtcaacataatgtccccccaaacacaaacaaagaggcttggccatctttgcagagcggt
acgacgagtaagccagagaggttaacaaatggaaacaagcctccactgatgacagtccca
cagccacagaaacccgacacacctcccttacagaattctaatcatagagccccgggtgcc
aatcttaaccgacacagaggacacgaaacaaatagtaacggtaaacctgtagaccggcct
ccaacaaattcaccatcgccagtggccgaggtgaaggcacactctcctccagtcagtgta
ccacagttgactccaaatcctataggtgctaacagaaagccattctttgacaactcacaa
gaccacttgtcgctattcagtgggaatggcttccctcctagaccgttgcataaaccccct
gtacagccttcacccattgcggagacaattccaacagccacagaaattccagacacaatt
cctgtatctagttcagcagattggcaaacggcatttggtttcacaagctcaactacagac
agtcatgaagacgacttaggttttgatccttggaatgaatctacaaaagcgctggcagat
cttatagaacgagaacaaggacagacacagcatcagcagaatttacacaattcaccaaga
tctgccccacctggcttcttacctgggctaggaaatcctttcacaatcaatcaaccgaaa
acagatcaaatagggggcagtaaaataatgaatttgatggcatcattttccactggcaac
accactgtacctcagcctcctggtttcgctgcactgccccccaataacacatgccatgat
gtgctttcagatataggtctatcaggaaaggagaacggtcccatgaataacgaccatgat
gtcttcaacacgaaagattggcaagagggactaagagcgctccttccgaacatcaatatc
agctttggtgctccaccagcctacccaacatcagccccaagatcaccgccacacatgatt
cagcctcaacagaaaggttggcctacgcagactcgctcagccgacctgtcctggatgtcc
acagaccccgccatagtcacgtcaggaagtgttaccgatgccaacagtctttcagaagat
ccgccacactggatgaagtcactgcaacagctgacagaaattgacagcctgcctggccag
aatcacagactacctttcgttcagaatttccaaattagaggaggacacagttggggacaa
ccagctcagaatccacccccgggctttcagtcacagattattcccccgtcaccagtagga
gagtcacaagtcgcagagggtttccactga
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