Lineus longissimus (bootlace worm): 135493816
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Entry
135493816 CDS
T09977
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135493816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llon03019
]
135493816
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
135493816
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
CSD2
Rrp44_S1
Dis3l2_C_term
Motif
Other DBs
NCBI-GeneID:
135493816
NCBI-ProteinID:
XP_064637468
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All DBs
Position
9:14282145..14292926
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AA seq
949 aa
AA seq
DB search
MLRSKTFVKKTRKGGILKIVREHYLRDDIWCGLEICEGCQQERDRQILVAKPENISSAVK
DSHYLLPDTNVVLHQIDVLEDEAFKNVIILQTVIEEVRHRSAPIYKRLKDLIDNTDRHFS
VFVNEFHRETYVEREPRESTNDRNDRAIRRCVSWYKEHLSAISSDAATVVLLTNDADNKE
KACKEGLIAFTVHEYVNSLVGCTDVKDRLAASDAGKKSFADKVLYPEHLTLSAIQRGIKS
GKYFQGSFMASRENYLEANVSVAEKDEMVFIQGSQNLNRAVQDDIVAIEMLPESEWSCPS
SMMMEDRNDDEQEDVTDKDKELKKKAPKVPKMKLPSGRIVGIIKRKWRQYCGILQPSPIK
EALHHLFRAAERRIPKIRIQTRQAAALTGMRIVVAIDSWPRNSRYPQGHFVRKLGEIGDK
DTENEVLLLEHDIPHSDFSEAVKSFLPKLPWVISDEEREKRLDLRDLYICSVDPPGCTDI
DDALHCRELENGNFEVGVHIADVSHFIRPGNAMDQEAMSRGTTVYLCDKRIDMVPELLSS
NLCSLRCDGERFAFSTIWEMTPDADIVNVKFAKSVIHSKASLTYAEAQLLIDDERKKDPL
TCGLRGLNRLAKVLKRKRIENGALTLASPEIRFEVDSETHDPIDVQAKQLRDTNSMVEEF
MLLANISTAEKTLAEFPDCAILRRHPAPPISNFEPVIKAAALKGFTLKCETGKELADSLN
AANIPDNPYFNTLLRIMTTRCMMQAVYFSSGMLTREEYGHYGLATPIYTHFTSPIRRYSD
IIVHRLLAVAIGADSSYPDLLDKRKTQTCCNNLNYRHKMAQYAGRASTGLHTQLFFKKRV
QDEEAYILFVRKNAIQIIIPKYGLEGTIFLDQCKVPFVYNEDEACQTATNGVKLQVFDPV
TVQVSIDRQNVQHQKLCSKLVKPEIPGLSVPPVSEKSSEDEPPTKKQKI
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgttgcgttctaagacatttgtgaaaaaaacaaggaaagggggcattctgaagatagtt
agagagcattatctgagagatgatatttggtgtggattggaaatatgtgaaggatgccag
caagaaagagatagacaaatacttgttgcaaagcctgaaaacattagcagtgctgtgaaa
gattctcactacttgttgcctgataccaatgttgttcttcatcagattgatgttttagaa
gacgaggccttcaagaatgtgattatccttcagacagtgattgaagaagttcgtcacaga
agtgctccaatttataaaagactgaaagacctcattgataacacagacaggcattttagt
gtattcgtcaatgaattccacagggagacgtatgtagaaagagagccaagagaatccacc
aatgaccgcaatgaccgagcgatacgacgatgtgtgtcatggtacaaggaacatttatca
gcaattagttctgatgctgcaacggtagttttactgacaaacgatgcagacaacaaagaa
aaggcctgtaaagagggcctcattgcatttacagtgcatgaatatgtcaacagcctggtc
ggatgcacagacgtcaaggatcgccttgctgcctctgatgctgggaaaaaaagcttcgcc
gacaaagttctataccctgaacatttgaccctgagtgccatccaaaggggaataaaatca
gggaaatatttccaaggatcgttcatggcgagccgggagaattatctggaggctaatgtc
agcgttgcggagaaggatgaaatggttttcatccaaggatcacagaatctgaatcgtgcc
gtacaggatgacattgtagcgatcgagatgctgccagaatccgaatggagttgtccctca
tccatgatgatggaggaccgtaatgatgatgagcaggaagatgtcactgataaggacaaa
gaactaaaaaagaaggctccaaaggtcccaaaaatgaagcttcccagtggccgaattgtt
gggatcattaagaggaaatggcggcagtactgtgggatactacagccttcacccatcaag
gaggcgttgcatcacctattccgggcagctgagaggcgcatcccaaagattcgtatccag
acaaggcaggcggctgctttgactgggatgaggattgtggtggccattgattcttggccg
aggaattcgcgatacccccagggtcactttgtgagaaaacttggagaaattggtgacaaa
gacacggaaaacgaagtactgctcctcgagcacgatatacctcattcagatttctccgag
gctgtcaagagcttccttccgaagctgccttgggtgatcagtgatgaggagagagagaag
cgtctggatcttcgtgacttgtatatttgtagcgtagatcctcccgggtgcacagatatt
gatgatgcccttcattgtcgagagttggaaaatggcaactttgaggttggtgttcatatc
gctgacgtgtcacacttcatccgaccagggaatgcgatggatcaagaggccatgagcaga
ggcaccactgtgtatctttgtgataagagaattgatatggtaccggagttgctgagttca
aatctttgttcactcagatgtgatggtgagagatttgccttttccaccatctgggagatg
acgcctgatgcagacattgttaatgtcaagtttgccaaaagtgtgattcactccaaggcg
tcactgacgtatgctgaagcccagttactcattgatgatgagaggaagaaggaccccctg
acttgcggtctcagaggcctcaaccgacttgctaaggtgctcaagaggaaacgaattgaa
aacggtgccttgacgctagcctctcccgagatcaggtttgaggtggacagtgaaacccat
gatcctattgatgtacaagctaagcaactgagggataccaattccatggtggaggagttc
atgttgttagccaacatctcaacggccgagaagacgttggcagaatttcctgattgtgcc
atcctgcgacgccatccagcaccaccaatatcaaactttgaaccagttatcaaagctgcc
gcgttgaagggcttcaccttgaaatgtgaaaccgggaaagaactggccgattccttgaac
gctgcaaacattcccgacaatccatacttcaacacgctactgcgaataatgaccacgcgg
tgtatgatgcaggctgtgtatttcagcagcgggatgctgaccagggaggagtatggccat
tacggtctggcaacgcctatctatacccattttacatcaccaattcgaaggtattccgac
atcatagttcatcgtctgcttgctgttgctattggtgctgattcgtcctatcctgatctg
ttggacaaacgcaagacgcagacctgctgtaataatttgaattatcgtcacaagatggcg
cagtatgctggcagagcttcgacagggcttcacacacagctgttcttcaagaagagagtg
caagatgaggaggcctatattctgtttgtgagaaagaatgccatacaaattatcattcca
aaatatggcttagaaggcaccatattcttggaccagtgtaaagtgcctttcgtttacaat
gaagatgaggcttgtcagacggcaaccaatggtgtcaaacttcaagtgtttgatccagtc
acagttcaagtcagtattgacaggcagaatgtccaacatcagaagctatgcagcaagctc
gtaaaaccagagattcccggccttagtgttccaccagtgagtgaaaagtccagtgaggat
gaacctcccacaaaaaagcagaagatctaa
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