Lineus longissimus (bootlace worm): 135494220
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Entry
135494220 CDS
T09977
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03020
RNA polymerase
llon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
135494220
09124 Replication and repair
03420 Nucleotide excision repair
135494220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llon03021
]
135494220
03400 DNA repair and recombination proteins [BR:
llon03400
]
135494220
Enzymes [BR:
llon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
135494220
Transcription machinery [BR:
llon03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
135494220
DNA repair and recombination proteins [BR:
llon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
135494220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
AcetDehyd-dimer
VasI
Motif
Other DBs
NCBI-GeneID:
135494220
NCBI-ProteinID:
XP_064638126
LinkDB
All DBs
Position
10:1094811..1107044
Genome browser
AA seq
1948 aa
AA seq
DB search
MATNDSPAALREVKRVQFGVLGPEECRRMSVTDGGGIKYPETMEGGRPKIGGLMDPRQGC
IDRTSRCQTCAGNQAECPGHFGHIELAKPVFHVGFFTKTIKILRSVCFFCSKLLMDSNHP
KVKDILAKSKGQPRKRMAHVYDLVKGKNICEGGDEMDMKLENQQDNVPQEDRKGHGGCGR
YQPKIRRAQLELIAEWKHVNEDSQERKIILTAERVHEILKNVSDEDCTVLGMDPKHCRPD
WLIITVMPVPPLCVRPAVVMYGSARNQDDLTHKISDIIKANNQLKRNEQNGAAAHIIAED
TKMLQFHVATFTDNEMPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTV
ITPDPNLRINQVGVPRTIAQNMTFPEIVTPFNIDRLQELVRRGPNQYPGAKYIIRDNGDR
VDLRYHPKPSDLHLQIGYKVERHMQDDDLIIFNRQPTLHKMSMMGHMVKVLPWSTFRMNL
SVTTPYNADFDGDEMNLHLPQSLETRAEIQELCMVHRMIITPQSNRPVMGIVQDTLTAVR
KMTKRDVFLDKADMMTLVMFLPSWDGKLPQPCILKPKPLWTGKQLFSLIIPGRVNCIRTH
SAHPDDEDNGPYKWISPGDTKVLVEDGVLISGILCKKSLGASSGSLLHIVVLEEGYNECA
LFYGYIQMVVNNWLLIEGHSIGIGDTIADPQTYLDIQNTIKKAKLDVIEVIEKAHNDELE
PSPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKAMVVAGSKGSKINISQVIA
CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREG
LIDTAVKTAETGYIQRRLIKAMESVMVRYDGTVRNQAEQMIQLCYGEDNLDAIHVEFQAM
PNLKPSHKVFEKKFKFDATNERSMRRSMNEDVVREVLGDAHIISELESEWEQLKVDRDQV
RRCFPTGDARIVLPCNMARLIWNAQKIFRIDIRKPCDLHPLKIIEGVRELTKKFVVVVGN
DRLSVQANENATTLMKILTRATLCTKRVTEEYRLSSEAFEWLLGEIDTKFLQSHVQSGEM
VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVFLMGQ
SARDAEKAKDVLCRLEHTTLRKVVANTAIYYDPDPQNTVISEDQDFVNVYYEMPDFDASR
ISPWLLRLELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDD
SKFQEEEEVVDKMEDDMFLRCIESNLLSDMTLQGIESIAKVYMHLPKTDDKKRVIITDTG
EFKGIQEWILETDGTSLMKVLSVKDVDPIRTSSNDIVELFGVLGIEAVRKGIEREMFNVI
SFDGSYVNYRHLSLLCEVMTAKGHLMAITRHGINRQDTGALARCSFEETVDILMEAAAHG
EFDPLKGVSECIMLGKLGKIGTGSFDLMLDAEKCKHGMEIPTNIGGMMMGGEGVTGMFFG
GGASPAAGASPQMTPWNQGATPSYASAWSPGLGSGMTPGGAGFSPSAASESGFSPGYSPA
WSPQPGSPGSPMSPYIPSPAGAMSPRYSPTSPAYMPQSPLVTAQSPSYSPTSPGYSPSSP
GGSGGYSPASPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP
SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPK
YSPTSPSYSPTSPSYSPSSPQYTPTSPKYSPTSPSYSPTSPKYSPASPTYSPTSPKYTPT
SPQYSPTSPQYSPSSPKYSPASPSYSPSSPDYSPASPSYSPTSPKYSPASPTYSPTSPKY
TPTSPTYSPTTPKYTPTSPSYSPTEEDK
NT seq
5847 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgaatgattctcctgctgcgcttcgggaggtcaaacgagtccagtttggggtg
cttggacctgaggaatgtcgtcgaatgtccgtcacagatggtggtggtatcaagtaccca
gagacaatggagggtggtcgccccaagattggcgggctgatggacccaagacaaggctgc
attgacaggacatctcgttgtcagacctgtgctgggaaccaagcagaatgtccaggccac
tttggtcacattgaattggcaaagcccgtgttccatgttggattcttcaccaaaactata
aagatcctgcgaagtgtttgtttcttctgttcaaaacttctcatggattcgaatcaccca
aaagttaaagatatcttagccaaatccaaaggtcagcctcgtaagcggatggctcacgtt
tacgatctggtgaaggggaagaatatctgcgagggaggtgatgagatggacatgaagctg
gagaaccaacaggataatgtcccacaggaggacagaaagggtcatggcggctgcggtcga
tatcaacctaagattcgtcgtgcccaacttgagctgattgccgagtggaagcatgtgaac
gaggactcgcaagagagaaagatcatcttgaccgccgagagagtacatgaaatattaaaa
aacgtgtcggacgaagactgtacggttcttggcatggatccaaaacattgccgaccagac
tggctgataatcaccgtaatgccggtaccgccgttgtgtgtgaggcctgctgtcgtcatg
tacggctctgcaagaaatcaggatgatttaactcacaagatctcggacataatcaaagct
aataaccagttgaagaggaatgaacagaacggtgcagccgctcacatcatcgccgaggat
accaagatgttacagttccatgttgctaccttcacagataatgaaatgcccggtttacca
aaggctgttcaaaaatcgggtcggcctctcaaatcagtgaagcaaagattgaaagggaaa
gaggggcgcgtacgtggaaacttgatggggaaacgagtggacttttcggcacgtaccgtc
atcacacctgatcccaatctacgaatcaatcaagtgggtgtgccaaggactatcgcacag
aacatgacgttccctgaaatcgtgacaccattcaacatcgacagacttcaagagttggtg
agaagaggtcccaaccagtatccaggtgctaaatacattatcagagacaatggggaccgg
gttgatctgcgatatcatccaaaaccgagcgaccttcatctccagatcggatacaaagtg
gagcgacacatgcaagacgatgatctcattatcttcaaccgacagccaactctccacaaa
atgagtatgatgggtcacatggtgaaagtattaccttggtcgacgttcaggatgaacctc
agtgtaaccactccctacaatgctgacttcgacggcgatgagatgaacttgcatttgcca
cagtcgctggagacacgagctgagatccaggagttgtgtatggtacatcgtatgatcatt
acaccacagtcaaacagaccagtcatgggtattgtgcaggatactctcacggccgtccgc
aagatgacgaaacgtgacgtgttcttagacaaggcggacatgatgacccttgtgatgttc
ctgccatcatgggatggcaagctcccacagccctgcatcctgaaaccgaagccactgtgg
acagggaagcagctgttctcgctcatcatcccagggagggtcaactgtatcaggacccac
agtgcacatcctgatgatgaggacaatgggccttataaatggatctcccctggagacact
aaggtactggttgaagatggagtactcatcagtggcatcctttgtaagaagtcgctcggt
gccagcagtggttctctgctacatatcgttgtgctagaggagggctacaatgaatgtgct
ctcttctatggttatatccagatggtcgtcaacaactggctgctcattgaaggtcactcc
attggtattggagataccatcgccgatccccagacctacctggacattcagaacaccatc
aagaaagccaagcttgacgtgatagaagtcattgagaaggcccataacgatgagttggag
ccgtctcccggtaacacactcaggcagacgttcgagaaccaagtgaacaggatcttgaac
gatgctcgtgacaagactggtagcagtgcccagaaatcattgtcagagttcaacaacttc
aaggctatggtggtggccgggtccaagggatccaagattaacatctctcaggttattgcc
tgtgtaggtcagcagaacgttgagggtaaacgaatcccattcggtttccgccatcgtacc
ctgccacatttcatcaaggatgattacggtcccgagtcgagaggattcgtggagaattcc
taccttgctggtttgacgccctctgagttcttcttccacgccatgggaggacgcgagggt
ttgattgatacagccgtcaagactgctgagactggctacatccagcgacgtctcatcaag
gctatggagtcggtcatggtccgttatgacggtactgttaggaaccaggcggagcagatg
atccagctgtgttacggtgaggacaacttggatgcaatccacgtggagttccaggccatg
ccaaatctaaaaccatcccacaaagtcttcgagaagaagttcaagtttgacgcgacaaac
gagcgttcgatgcggcgaagcatgaacgaggatgtcgtgagggaagtccttggtgatgca
catatcatctctgagttggagagtgaatgggaacagctgaaggttgatcgggatcaagtg
aggaggtgtttcccaacaggcgatgcgaggattgtgttgccttgtaacatggctcgtctc
atctggaacgctcagaagatcttcagaattgatataagaaaaccatgtgatcttcaccca
ctcaagatcattgaaggcgtgagagagttaaccaagaagtttgtggtcgtcgtgggcaat
gatcgtttgagtgtccaggctaacgaaaacgccacaaccctgatgaagatcctgacccga
gctactctctgcacgaaacgagtcacggaggaatacaggttatcgtcagaggcgtttgag
tggctccttggagagattgatacgaaattcttacagtctcacgtgcaatctggtgagatg
gttggagcccttgctgctcagtccctgggagagcctgccacccagatgaccttgaacact
ttccattatgccggtgtgtctgccaagaatgtcacccttggtgtgccacgtctgaaagag
atcatcaacatctctaagaagcccaagaccccgtcgctgactgtgttcttgatgggccag
agtgctcgtgatgcggaaaaggcaaaggatgtcttgtgtcgccttgagcacaccacgctc
cggaaagtcgtcgcaaacaccgccatctactacgaccctgatccacagaatacagtgata
tccgaggatcaggatttcgtcaatgtctattacgagatgcctgactttgacgcatcacgg
atctcaccttggctcctcaggttggagcttgatcgtaaacgtatgactgataagaaactt
accatggaacagatctcagaaaagatcactgctggcttcggtgatgatctcaactgcatc
ttcaacgatgacaatgccgagaagttggttctgcgaatccgaatcatgaactcagacgac
agcaagttccaggaggaggaggaggttgtggacaagatggaggatgatatgttcctgaga
tgtatcgagtccaatctgctcagcgacatgaccctacagggtatcgagtcaattgcaaag
gtgtacatgcatctgcccaagactgacgacaagaagcgtgtgatcatcacagacaccgga
gagttcaagggtattcaggaatggatccttgaaacagatggtaccagtctcatgaaggtg
ctcagcgtgaaagatgtcgaccccatcaggacgtcctccaacgatatcgtcgagctattc
ggggtccttggcattgaagcggtcaggaaaggaattgaacgtgagatgttcaacgtgatc
tcctttgatggttcctacgtcaactatcgccatctgtcgctgctttgtgaggtgatgacg
gccaagggtcacttgatggccatcactcgtcacggtatcaacaggcaggacactggagct
ttggcaaggtgttcttttgaggagacggttgatatcttgatggaagcggctgcccacggg
gagtttgaccccctcaagggtgtctctgaatgtatcatgcttggaaagctaggaaagatt
ggtactggctcattcgacttgatgctggatgctgagaaatgtaaacacgggatggaaatt
ccgacgaacattggtggaatgatgatgggaggtgagggcgtgactggcatgttcttcggt
ggcggtgcaagtcctgctgctggggcgtcccctcagatgacgccatggaaccaaggtgca
acgccatcatatgccagcgcttggtcaccaggtcttgggagcggtatgacaccaggtgga
gctggcttctccccgtctgctgctagtgagagtggtttcagccccggatacagtccagcc
tggtcaccacaaccaggctcgccaggatcaccaatgagtccatacataccaagcccagct
ggtgccatgtcaccaagatattcgccaacgtctcctgcgtatatgccacagtcaccattg
gttacagcacagagtccgagttactccccaacgagtcctggatactctccgtcaagtcct
ggaggcagtggaggatattcaccagcgtcgccgaactacagtccgacatcgccctcgtat
tctccaaccagtcccagttacagtccaacatcgcctagttacagtccgactagcccgtcg
tacagtcctaccagtcccagctacagcccaacaagcccatcttactctcccacgtctcct
tcttacagccccacaagccctagctacagcccgacaagccctagctacagccctactagc
ccttcgtattcaccaacgagtccgagttactcaccaactagtccaagctacagtcccaca
agccccagttacagcccaacatccccaagctacagcccaaccagcccaagctactcacca
acatcaccaagctactccccaacctccccctcgtattccccaacttctccctcgtacagt
ccaacaagcccaagctacagtccgacgtcaccttcgtacagtccgactagccctagctat
tccccaaccagtcctagctacagtccgacatccccgagctactcgccaacaagtcccaag
tacagcccgacttcaccttcctactccccaaccagtccttcatactccccgagctcacca
caatacacaccaacatcccccaaatattccccaaccagcccctcgtactcgccgacatca
ccgaaatattcccctgcttcacccacgtacagcccaaccagccccaaatacaccccaaca
tccccacagtacagtccaacctccccgcaatacagcccaagctcaccgaagtattcacca
gcttcgccaagctactctccgtcaagccccgactactcccctgcatcacctagctactct
cctaccagccccaaatattcaccagccagtcctacctactctcccacctcgcccaaatac
acaccaactagtccaacgtactctccaacgacgcccaagtacacccccacaagcccctca
tactctcccacagaggaggacaaataa
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integrated database retrieval system
