Lineus longissimus (bootlace worm): 135496339
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Entry
135496339 CDS
T09977
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135496339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llon03019
]
135496339
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
135496339
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
135496339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
135496339
NCBI-ProteinID:
XP_064641677
LinkDB
All DBs
Position
11:complement(11396571..11423505)
Genome browser
AA seq
2495 aa
AA seq
DB search
MNLDSLSFALSQISYLVANLTKKNYKSSVAEISHLVAQHGAEADRHLFRCLFSHVDFGGD
GKSSGKDFHQTQFLIQECASLTSKPNFISALCYAVDSPLHHQKSLKPTAQLFSQISKVLR
LTRVQEVLLGLALLSSQIPETRNYAAQFVKQKLPDLLRSYIDLDTASVQEGGLQDTAVEV
VHLLLTQFLQRRDQFGIGTDQKEAFLKALRKDFPVDRVPIVLFPLLYPDKQDPAIPRITL
DAVNMPKAMNESSLADMIVEVGYSCTASIEECRTTLVQFGVREITPASIARVLGLMAKTP
SGLGDQINVQSINQPGGSIWGESKEKQDNGGLATWNVDVFVQVVQDLAPHLNWKEVVGEL
DHPGFVILSKQGFRLLVQALFRGIQDIFPVEFIYRHWKNSEGQLSWITQSLKYPDVFCFA
DYQCHTVVIDILKMPPDDENREIATWKSLDLVETLLRLSEAGHYQLVSELFKFPIQHCPD
MLVLALLQIAPQPNWNTLKHELISTLMPTFLGNHQNSAIVLHYAWHCQGQSTTIRTLIMH
SMAEWYMRGDHHDQVRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKW
LGDKIREHGEPFVQSVVNFLKRRCPQVVGGAMKEDPQHPQSKNQLLPADTFNTMLACLQA
CCSSLVAPELTDAIVTMVANANMMMKQRLPPPGAIGAKPMNQGMGSAINNPMDQLGPNGN
FGLGTTMPSSVSAPNMPGFPQSLGPLNTTPGSPAKGLPFPGQSQAQGQAQTSYSMQSLAT
QSLATQLQGLSMQTTMPMSTPMSRSTASSGTPSLGALSAAAAMKQQQQQQTQQTADRLRQ
GESAAGDMSSIFPEMNQQFSKEIEDEANSYFQRIYNHPPHPTISIDEVLDMLKRFKDSSD
RKEKVGIKKEVFHCMLRNLFEEYRFFPQYPDKELHTTAVLFGGIIEQGLVTYMSLGIALR
FVLEALKKPYGAKMYNFGIAALDRFKTRLKDYPQYCQHLASIPHFNQFPPHLIEYVQCGA
RSQEPPNRPQGPATPSQSTPSPLPAASTTPVTTSAAAAPSSTTSTQAAISKTIAKPSIAN
TTNIDTLIAGTEGKEEICVPREAVQDKVFFIFNNLSQSNMAQKSEELKEAMSEEHMPWVS
QYLVMKRASIEPNFHTLYANFIDHMHNNWGIIGMVIKETFRNIKVLLRSDKGVANFSDRS
LLKNLGHWLGLLTLGKNKPILHIDIDLKSLVYEAYHKGAQELLYVVPFVAKVVESCAKSK
VFKPPNPWTMGIMNILYELHQEPDLKLNLKFEIEVLCKALNLDINSLKNPRYLRNRDKLA
TLEYQLSSRGKIKEPTPTLQEDNQAAAQTAALVAAAAAAATAAGAQQSSLLPPSGLMPPS
GTNSFSAGLNASLVASGMAGNIAGNMNLSAGGMMTAITTPTVSTVVSSSGVATTTTSASA
TAPPQPQFTFMDINTSSFTGLVPHIVINEQIALFQTNPQLKQYVRPAIERSVQDLLPPVV
ERSIKIALTTCEQIVKKDFALDPEEGRMRMAAHHMVRNMTAGMALITCREPLLISITTNL
KTAFLQTFRVGESQNATPPQKEMIEQASQVLATDNTELACAFIQKTAVEKALPEMDKRLA
TEFELRKHARNEGRRYCDPVVLTYQAERMPEQIRLKVGGVTPQQLAVYEEFGRNIPGFLP
TGGASSSDAQHPAFFKQLPPQQQPQQPQAPQSFSTDEITQIYDKIAHDIEQYLLSQYAIS
QQQSPLLQSLASLLEAVLLARNSREIVTAIALLQKAVEGLLDGISSLTPASDPEAMIRYR
DCHLLVLRGLQDQRAYGPQWTNKQVTRCLIECREDFKYNVEAVDVLIRSHLVNMQQYDVH
FAQSMDNGLNYMAVAFAMQLVQRFCIDEKHNTQINEADLYNTIETLARIAAHSRQAPDGL
TGLIETIRQHNDGGLLDRAPGGPTLHSGISQAREFDDPPGLHEKTEFLLREWVNMYHSPA
AGRDSTKAFSAFVGQMHQQGILKSDDLIARFFRLCTEMCVDLCYRALGEQTHSATLIRAK
CFHTLDAFVRLIALLVKHSGDAANPVTKINLLNKVGRAAAIVLGIVAGVLLQDHEVRNTE
FQQLPYHRIFIMLFIELNAPELVLDSINFQILTAFCNTLHILRPAKAPGFSYAWLELVSH
RVFIGRMLAITPAQRGWGMYAQLLIDLFKFLAPFLRNADLTKPTQLLYRGTLRVLLVLLH
DFPEFLCDYHYAFCDAIPPNCIQVRNLILSAFPRNMRLPDPFTPNLKVDMLNEITHAPRI
LTNFTNMIQPPTFKKDLDSYLKTRSPVTFLSDLRSNLQVGSEPGNRYNIQLINALVLYVG
TQAIAYIQQKSLTPSMTTIAHSSHMDIFQNLAVDLDSEGRYLFLNAIANQLRYPNSHTHY
FSCTLLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPQFRFWNHEFV
HCAPEIETLFESVARSCTKTHRDDVNETHFDVPKI
NT seq
7488 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggactccctgtcctttgccttgtctcaaatcagttatttagtggcaaatttg
acgaagaaaaattacaagtcgagcgtcgcagaaatctctcatcttgttgcccagcacgga
gctgaggctgatcggcatctgttcaggtgtctattctcccacgttgattttggtggtgat
ggtaaaagcagtggcaaagactttcaccaaacacaattcttgattcaagagtgtgcatcg
ctcacatccaaaccgaacttcatatcggcattgtgctacgcagttgatagcccgctacat
caccagaagagcctaaagccaactgctcagctcttctcccagatcagcaaggtcctacgc
ctcactcgcgtgcaggaagtcttactaggcttggccttactcagctctcagatccctgag
acaaggaattacgctgctcaatttgtgaagcagaaactacctgatcttctcaggtcttat
atagatttagacacagccagtgttcaagaaggaggcctccaggacacggctgttgaggtc
gtccacttgttattgactcagttcctgcagagacgggaccagtttggcattggtactgac
caaaaggaagcttttcttaaggcactcagaaaagattttcctgttgatcgagttccgatt
gtccttttcccgctgctttacccagacaaacaagacccagcgatcccaaggattacattg
gacgctgtcaacatgccaaaagcaatgaatgagagttcattggctgatatgatcgtagag
gttggctacagttgcactgccagcattgaagaatgtcgtacgacgctggtgcagtttggt
gtacgagagatcaccccggcctctatagcacgagttctgggactgatggccaagacaccc
tctgggttaggagaccaaatcaatgtacagtcgatcaaccaacccggagggagcatctgg
ggagagtccaaagagaaacaggataatggcggcctggccacgtggaacgttgacgtgttt
gtacaggttgttcaggatctggctcctcatctcaactggaaagaggtggtgggtgagctc
gaccatccaggctttgtgatcctgagcaagcaaggattccgactgttagtccaagctctc
ttcaggggcatccaggatatctttcccgtcgagttcatctaccggcactggaagaactcg
gagggacaactctcttggatcacgcagtcgttgaagtaccctgatgtgttctgttttgcg
gattatcagtgtcatacagttgtgatagacattttgaagatgccgcctgatgatgagaat
agagagatcgcaacttggaaatcactagatctagttgagacactcctgagactatcagaa
gctggtcactatcagttggtctccgagcttttcaagtttccgattcaacactgcccggat
atgttggtgctagctttgttacagatcgctcctcaaccaaactggaacacactgaagcat
gaactgatctccacgctgatgccaactttcctcgggaatcaccagaactcggcaatagtc
ttacattatgcttggcactgccagggccagtcgacaacgattcggacactgataatgcat
tccatggctgagtggtacatgcgaggagaccaccacgaccaggtcagactctccaggata
ctggacgtggcacaggatctcaaggcactatccatgttgttgaacgccacgccatttgct
tttgtgatcgacctggcgtgcctcgcctccaggagggaatatctcaaactggacaagtgg
ttgggtgataagatcagagaacatggggaaccattcgtacaatcagtcgtcaatttcctg
aagcgtcgctgccctcaggtagtaggtggcgctatgaaggaggacccacagcatccacaa
tcaaagaaccaattactaccagcagacacgtttaacacgatgttggcatgtctccaggcc
tgctgcagcagtctcgtggctccagagttgacagatgccatcgtgaccatggtagctaat
gctaacatgatgatgaagcaacgcctgccacctccgggggcgatcggtgccaaaccaatg
aaccaagggatgggcagtgccatcaataacccgatggatcagcttggccctaatggtaac
tttggcctcggcaccaccatgccctcatcagtgtcagctcccaacatgcccggcttcccc
caaagccttggtcccctcaacacgacaccgggatccccagcgaagggcctgcccttccca
ggtcagtcccaggcccaaggacaggcgcagacaagctattcaatgcaatctttggccaca
caatctttggcgacacagttacaaggtctctccatgcagacgaccatgccaatgtcgacg
ccaatgagccgctcgactgcctccagtgggacgccgtccctcggtgccctcagtgccgcc
gctgccatgaaacaacaacagcaacaacagacacagcagacggccgacaggctgcgccaa
ggagagtctgcagcgggtgacatgtcgagcatcttccccgagatgaaccaacagttctcc
aaggagatcgaggacgaggcaaactcgtatttccagcgcatctacaaccatccgccgcat
ccgaccatctcgatcgacgaggtcctcgacatgttgaaacgcttcaaggattcctctgac
aggaaagagaaggtgggcattaagaaggaggtgttccattgtatgctgaggaatctgttt
gaggaataccgcttcttcccccagtacccagacaaagaactccacacgactgccgtactg
tttggcggcatcatcgaacagggcctagtcacgtacatgtctctgggtatagcattacgg
tttgtgctggaagctctgaagaaaccgtacggggctaagatgtacaactttggcatcgct
gcgttggatcgtttcaagacgagactgaaggattacccacagtattgccagcatctggca
tcgataccacatttcaatcagttcccaccgcatcttattgagtacgtacagtgcggtgca
aggagtcaggagccgccaaatcgaccgcaaggtccggccacacccagccagagcacacca
tcgccactccctgctgcttcgaccacaccagtcacgacgtctgctgctgctgcgccaagt
tcgacaacatcaacgcaagctgcgatctcgaaaacgattgcaaagccgtcgattgccaat
acaacgaatatcgacacgctgattgcgggtacggaggggaaggaggagatatgtgtacca
cgggaggcagtgcaggataaagtgttcttcatcttcaataatctctcgcagtcgaacatg
gcacaaaagagtgaggagttgaaggaagctatgtctgaggaacacatgccgtgggtttcg
caatacctggtcatgaagagagcgagtattgagcctaacttccacaccctctacgccaac
ttcattgaccatatgcacaacaactggggcattattggtatggtcatcaaggagactttt
agaaatatcaaggttttacttcgaagtgacaagggcgtggctaacttctccgacagatca
ctgctgaagaatcttggtcattggctcggcttgttgacgttgggcaaaaacaagccgatc
ttacacattgatattgacctaaagtcgcttgtttacgaagcctaccacaagggggcacag
gagttactgtatgtagtgccctttgttgccaaagtcgttgaatcatgtgctaaaagtaag
gtcttcaagcctcctaacccatggaccatgggcattatgaatatactgtacgaactgcac
caggagccagacctcaagttgaacctgaagtttgagattgaggtcttatgcaaggcgctt
aacttagacatcaattcgctaaagaatccacgctatctacgcaatcgtgacaagctagcg
acgttagagtaccagctctcctcgcgaggcaagatcaaagagcccacgccaactctccag
gaggacaaccaggcagcagcacagacagctgcccttgtggcggccgcagctgctgcagcg
acagcagccggtgctcagcagtcatcgctcctaccaccgtcaggtctgatgcctccgtcg
ggaaccaacagcttctcagcgggactgaacgcgtcccttgtcgcatcgggaatggccggc
aacatcgctggtaacatgaacctctccgccggcggaatgatgacggcaatcacgaccccg
actgtctccacggtggtctcgagctctggcgtggcaacgacaacaacatccgcatcagcg
acggcaccgccacagcctcagttcacgttcatggacatcaatacgtcatcgtttaccggg
ctcgttcctcatattgtgataaacgaacaaatcgcactattccagaccaacccacagttg
aagcaatatgtccgcccagcaattgagcgttcggtccaagacctcctcccaccagttgtg
gagagatcgatcaaaatcgctctgaccacctgtgagcagattgtcaaaaaggatttcgcc
ctggaccccgaagagggccgtatgagaatggctgcccaccacatggtccgcaacatgacc
gccggcatggctttgatcacatgtcgggagccattgctcattagcataacaaccaatcta
aagactgctttcttgcagacttttagggtaggtgaaagtcagaatgccaccccgccccag
aaggagatgattgagcaggcaagccaggtgttggccacggataacacagaactggcctgt
gccttcatccagaagaccgcagtggagaaggcactgccggagatggacaagagactcgcc
acagagttcgagctgcgtaaacatgcgagaaatgaaggcagacgatattgtgatcctgtt
gtgttgacgtaccaggccgagaggatgcctgagcagatcagactgaaggttggcggcgtt
accccacagcagctcgctgtatatgaagagttcggccgcaacattcccggcttcttgcca
acaggtggcgcctcatcatcagatgcgcagcatccggcattcttcaaacagttgccaccg
caacagcagcctcaacagccacaggctcctcagtcattctccactgatgagatcacacaa
atctacgacaagatagctcacgatattgagcagtacctgctgtcacagtacgccatatcc
cagcagcagtctccactcctgcagtctcttgctagtctgctggaggcggtcctcctggca
aggaactcgagggagattgtcacagcaattgcgctgctacagaaggctgtagaaggacta
ctagatggcatctcctcgctgacgccagcctcggatcctgaggcaatgatccgataccgc
gactgccacctcctggtgctgcgaggcctccaagaccagcgagcgtacggaccgcagtgg
accaacaagcaagtgacgcgatgtctgatcgagtgtcgcgaagacttcaagtataacgtg
gaggctgtggatgtcttgatccgtagtcaccttgtcaacatgcaacagtatgatgttcat
tttgcacagtcgatggacaatggattgaactacatggccgtcgcgttcgccatgcagctc
gtccagagattctgcatcgatgagaaacacaacacccagattaacgaggcagacttgtac
aacacgattgagacgctggctcgcattgccgctcattccagacaagcacctgacggactg
actggtctcatcgagacaatcagacagcataacgatggtggtctcctcgatcgagcccct
ggtggcccgacgttacactcgggcatctcccaggcgcgcgagttcgatgatccaccaggc
ctgcatgagaagacagagttcctgctaagggagtgggtcaacatgtaccactctcctgct
gctgggagagacagcactaaggctttctccgctttcgtcggccagatgcaccagcaaggc
atcctcaagtccgacgaccttatcgcacgtttcttccgcctctgcacggagatgtgcgtc
gacctgtgctatcgtgccttgggcgagcagacacacagcgccacgctgatccgcgccaaa
tgtttccacactctggatgcctttgtgcgtctaatcgctctcctggtgaaacattccggc
gacgcagccaacccggtcacgaagatcaaccttctcaataaagtgggtcgagcggcggca
attgtgcttggtattgtggcgggcgtcctcctgcaggatcatgaagtgaggaacaccgag
ttccagcagttgccttaccataggatattcatcatgctcttcattgaactaaacgcgcca
gagttggtcttggacagcatcaatttccagattctgactgcattttgcaatacccttcat
atcttgagaccagcaaaggcaccaggtttctcctacgcctggctcgagttggtgtctcac
cgagtattcattggacgtatgttggcaatcactccggcacagaggggttggggcatgtat
gctcaacttctgatagacttgttcaagttcttggccccattcttgaggaacgccgacctg
accaagccgacacagttactctacaggggtacgctgcgagtccttttggtgctgctacac
gacttcccagaattcctctgtgattatcactacgcgttctgcgacgcgattccacccaac
tgtattcaagtgcgtaacctgatcttgagtgctttcccacgcaacatgcggctgcccgat
ccgttcacacccaacctcaaagtcgacatgttgaatgagatcacacatgcgccgaggatc
ttgacgaatttcaccaacatgattcaaccgcctacattcaagaaggatctcgattcctac
ctgaagacacgctccccagtcacattcttgtcagatctgcgcagcaacctccaagtgggg
agcgagcctggtaaccgatacaacatccagctgatcaacgccctggtgctgtatgtgggc
acacaagctatcgcctacatccagcagaagtcgctgactccgagcatgacgacgatagct
cactcgtcacatatggatatcttccagaacttggcagttgatcttgactcggaaggccgc
tacttattcttgaatgccatcgccaaccagctgcggtacccgaacagccatacgcactac
ttcagctgtaccctgctgtatctgttcgcggaggcaaacaccgaggcaatacaggaacag
atcactagagtgttactagagcggctgatagtgaaccgaccccacccatggggcctgtta
atcaccttcattgagctcatcaagaacccacagttccgattctggaatcatgagttcgtt
cattgcgccccagaaattgaaacgttgttcgagtcagtggcaaggagctgcaccaagaca
catcgagatgatgtcaatgaaacgcattttgacgtccccaagatttga
DBGET
integrated database retrieval system
