Lineus longissimus (bootlace worm): 135497940
Help
Entry
135497940 CDS
T09977
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
135497940
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
llon00536
]
135497940
Glycosaminoglycan binding proteins [BR:
llon00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
135497940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
135497940
NCBI-ProteinID:
XP_064644050
LinkDB
All DBs
Position
13:complement(4705051..4722221)
Genome browser
AA seq
1488 aa
AA seq
DB search
MTRDAVMQALGLLTVVTLAAAGVVKDAGSSCNYMGETYEHLDKWTPYGVKDPCFVCTCEN
GEFTCDKYLCRDLPCSGDGYHPAFEECCGQCAAGGQMAAAERQHYENLQGQLEADTEAEA
QPSGTHREAKKRPDPTGPPGRTGRQGKQGPIGDPGEDGDNGIPGETGSRGPEPSRETWWG
YLSQYQAQQGEKGPGPNAGWGQAATMTARPGPPGARGPPGPPGPAGTPGFQGLRGEPGDS
GSPGPNGARGPPGPPGFAGKDGEQGRDGESGPRGLPGQPGSRGMPGMPGMPGNKGHMGFR
GLPGKKGNEGKTGSKGPMGEIGQPGPPGAIGPRGAPGERGRDGSPGPAGLRGIDGLSGSP
GPPGPNGQPGPPGFSGPAGGKGDSGPTGAKGSVGLQGPRGESGSPGQPGNPGQAGPDGSP
GESGEKGGMGPPGPSGAPGFPGPTGLTGSQGPSGSSGLKGDVGPQGSPGFAGDAGTNGKD
GLPGESGARGPRGPAGKRGSRGSSGQPGPPGFQGERGQPGGRGPAGNDGPPGPKGEDGSA
GKAGTDGDKGPPGDMGRPGIQGAPGPRGSPGTAGSDGKPGPRGPSGAAGQDGKNGEPGQI
GQPGLPGPQGAPGGRGSSGESGKDGGPGIPGPPGPAGDPGDAGPPGLRGDRGRAGDRGKD
GSTGQRGAPGFQGLPGPAGAPGEQGKIGDVGGPGPAGKDGLDGGRGERGPPGDRGEPGSR
GIPGPRGPSGPGGRDGDRGQPGTSGNKGEPGPAGLIGIPGEPGGPGGKGPKGDLGDIGPP
GKPGGPGGPGKRGLTGAPGDPGPHGLSSGKGSLGPPGPPGEDGFDGKDGEPGPPGLPGDN
GRPGPAGLAGPQGGKGDTGSGGSPGSTGLPGPRGMRGSPGPAGKDGVQGRSGPRGDNGKN
GETGPGGPPGAPGPSGAPGPPGGPGPTGPAGKTGERGLGGESGPSGRPGDNGNPGPPGVD
GMKGESGTDGRDGNNGPSGPPGPQGTRGLVGLPGIRGEPGTVGPAGGRGEPGPSGPSGKN
GDRGSPGQRGPMGAPGGPGFPGNDGQPGKDGAAGLDGRNGEKGPTGNSGQQGPAGMPGPM
GAPGPSGPAGSAGDRGERGEPGPAGLQGPDGPRGGPGAPGAQGIKGERGTSGGKGDKGWR
GLPGLPGLQGPSGSPGDNGQTGQPGPPGARGSPGPRGGTGPSGNSGPPGEAGRPGPRGQS
GDDGKDGPTGQPGPPGPPGPPGDSAGYAGSFTSMFSRSSGTKARFADPVMGDQAYQDKKG
DKEDAFEALTQLQEALEKLRNPLGTKTAPARTCKDLALAHPEYDDGTYWIDPNQGSPKDS
IEVYCNIKQHETCVFAKPSVVDKARWFSDALGGHSWFSEEAEHGSEFLYKTDRVQLTFLQ
LLSTDGFQNITYHCRNSVAFYDAAGMNYDQAIKMETNNDLELSADGQLKARYNVLLDECQ
YKKSTWGKTVFEVRTKKPQRLPIQDIAVSDAGRPDQAFGLEIGPVCFS
NT seq
4467 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgggacgcagtgatgcaagccttagggcttttgaccgtggtcacgttagcagca
gcaggagtggtaaaggatgcaggttcaagctgtaattatatgggagaaacatacgaacat
ttggacaaatggactccatacggtgtcaaggacccctgctttgtatgcacttgcgaaaat
ggagaattcacatgtgataaatacctttgccgtgacctcccatgtagtggggatggatac
caccctgccttcgaggagtgctgcggtcagtgcgcggccggcggtcaaatggcggcagcg
gagaggcagcattatgaaaatctacagggccaactcgaggctgacaccgaagccgaggca
caacctagcggcacccaccgagaagccaaaaaacgacctgaccctaccggcccacccgga
cgaaccggccgccagggcaaacaaggacccattggtgaccccggcgaggatggagataat
ggtatccccggagagaccggaagcagaggacccgagccttctcgtgagacgtggtggggc
tatctcagtcaataccaggcccagcagggcgagaaaggacccggaccaaacgcaggatgg
ggacaggctgccactatgactgctcgtccaggcccaccaggcgcccgaggacccccagga
ccacctggaccagccggtacaccaggattccaaggactgcgaggcgagcccggagactca
ggatcaccaggccccaatggtgcacgaggaccaccaggaccacccggattcgctggcaag
gacggagagcaaggacgcgacggcgaatcaggaccccgaggtcttccaggacagcccggc
agcagaggtatgcctggtatgccaggtatgcctggcaacaagggacacatgggattccga
ggccttcctggcaagaagggaaacgagggtaaaactggctccaaaggtcctatgggagag
atcggtcagcctggaccccccggagctatcggcccccgtggtgcacccggagagagagga
cgtgatggctcccctggtccagctggtctgcgcggtatagatggtctgtctggctcacca
ggaccaccgggaccaaacggtcaaccaggtccaccaggcttctcaggcccagccggaggg
aagggagattctggtccgacaggagctaagggaagtgtaggtctgcaaggtccccgtggt
gagtctggctccccaggtcaaccaggaaatcctggtcaggctggccctgacggtagcccc
ggtgagtcgggagaaaagggaggaatgggcccccctggtccatccggagccccaggattc
cccggacccacaggattgacaggctcacaagggccctcaggatcctcaggtctgaaggga
gacgttggtccacagggtagccccggcttcgccggagatgcaggaacaaatggaaaggac
ggtctaccaggcgagtcaggagcacgaggtccccgagggcccgctggaaagaggggctcc
cgtggcagcagtggccaacccggccccccaggattccaaggagagcgaggacagcccggc
ggtcgtggacctgctggtaatgacggaccaccaggacccaagggagaggacggttcagca
ggaaaagcgggtacagacggagacaagggaccaccaggagacatgggcagacctggtata
caaggcgcccccggcccacgcggaagtccaggaactgcaggttctgacggaaagcccggc
ccacgcggtccatctggtgcagcaggtcaagacggaaagaacggcgaacccggtcagatt
ggacaacctggtctacctggcccgcaaggtgcacccggaggcaggggctcatctggcgaa
agtggcaaagatggcggtcccggtattcctggcccaccaggtcctgctggagatccagga
gatgctggtccaccagggttgagaggagaccgaggtcgcgctggagatcgaggcaaggac
ggttcaacaggtcagcgaggagcaccaggattccaaggtctacctggcccagccggagca
cctggagaacagggaaagattggagacgtcggaggcccaggacccgccggtaaagatggt
ttggatggaggacgaggagagcgaggtccacctggtgaccgtggcgagcctggcagtcga
ggaatacccggtccacgcggcccaagcggtccaggaggtagggacggcgacaggggacaa
cctggaacaagcggaaataagggagaaccaggtccagctggtctaattggtattcccgga
gaacctggcggtccaggaggaaaaggacccaagggagaccttggagacatcggcccacca
ggcaagccaggcggcccaggaggaccaggaaaacgaggtctaaccggcgcgccaggagac
ccaggaccacacggtctcagcagtggaaagggaagcttaggacccccaggacctcccggc
gaagatggtttcgacggcaaggatggagaacccggtccaccaggtctgcccggtgataat
ggacgcccaggaccagctggtcttgcaggccctcaaggaggcaagggagacactggttca
ggtggttcacctggatcaactggcctaccaggcccaagaggaatgcgaggctctcctgga
ccagcaggcaaagacggagtgcaaggtagatctggaccacgaggagacaatggcaagaat
ggagaaactggtcccggaggtcccccaggagccccaggtccatccggtgcccctggccca
ccaggcggtcctggtcccaccggtccagccggcaagacaggagagcgtggtcttggtgga
gagtctggtccatcaggaaggccaggtgacaatgggaacccaggaccacctggtgttgac
ggcatgaaaggagagtctggtactgatggacgggatggaaacaatggaccttctggacca
cctggcccacagggaactagaggactggtcggtctaccaggtattcgtggcgaaccagga
actgttggtccagccggaggtcgtggagagccaggcccatcaggtccaagtggaaagaat
ggcgatagaggttcacctggtcaacggggtcctatgggagcccccggtggtcctggattc
cctggtaatgatggacagcctggtaaggatggtgcagctggattagacggacgaaacggg
gagaagggaccaactggaaactctggccaacagggtccagcaggaatgcctggtccaatg
ggagctcccggtccatcaggcccagccggttcagcaggagacagaggagagcgaggagaa
ccaggtccagctggtctacaaggtcccgacggcccacgtggaggccccggtgcaccagga
gcccagggaattaagggagaacgtggaacatccggcggtaaaggagacaaagggtggaga
ggtctacccggtctacccggccttcagggaccatccggctcaccaggagacaacggacaa
accggacaacctggacctcctggcgcacgtggatcacctggcccacgaggagggactggc
ccatctggtaatagtggcccccctggagaagctggacgcccaggtcctcgtggtcaatct
ggagatgatggcaaggatggtcccactggtcaacctggcccaccgggtcctcctggtcca
cctggcgactcagctggctatgcaggaagtttcacaagcatgtttagcagatcgagtggt
accaaggcccgctttgcagatcctgtgatgggcgaccaagcctaccaagacaagaaggga
gacaaggaagacgcgttcgaggccctaacacaactccaggaggcacttgagaagttaagg
aacccactgggtaccaagacggcccccgccaggacttgcaaagaccttgccctcgcgcat
ccagagtatgacgatggtacctactggatcgatcctaaccagggttctcccaaggactcc
attgaggtgtactgcaacatcaaacaacacgaaacatgcgtgttcgccaagccaagcgtt
gtggacaaagccagatggttcagcgatgcgcttggtggccactcctggttcagtgaggag
gcagagcatggaagcgagttcctgtacaaaacagaccgagtccaactcaccttcctgcag
ctgctctcaacagatggcttccagaacatcacctaccattgccgcaactctgtcgcgttc
tatgatgccgccggcatgaactacgaccaggccatcaagatggagacaaataacgacctc
gagctctctgctgatggccagctgaaggccagatacaatgtcttattagacgagtgccag
tacaagaagagcacttggggaaagacagtcttcgaagtccgaaccaagaaaccacagagg
cttcccatccaagacatcgcagtgagcgacgccggtcgaccagaccaagcattcggtcta
gagatcggaccagtctgcttctcctag
DBGET
integrated database retrieval system
