Lineus longissimus (bootlace worm): 135500072
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Entry
135500072 CDS
T09977
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03022
Basal transcription factors
llon03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
135500072
09124 Replication and repair
03420 Nucleotide excision repair
135500072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llon03021
]
135500072
03400 DNA repair and recombination proteins [BR:
llon03400
]
135500072
Enzymes [BR:
llon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
135500072
Transcription machinery [BR:
llon03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
135500072
DNA repair and recombination proteins [BR:
llon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
135500072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
135500072
NCBI-ProteinID:
XP_064647287
LinkDB
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Position
16:complement(4495145..4501966)
Genome browser
AA seq
802 aa
AA seq
DB search
MGGGTKREKKSKGKKSKKSKKAADSYEPDDEDSNYGDDEPVGDKGLVPEVAKQNAEEAIT
APEDEYGAKDYRSLLSLKLDHNARPIWVAPNGHIFLEAFSPVYKHAHDFLIAIAEPVCRP
EHIHEYRLTAYSLYAAVSVGLQTQDIIEYLKRLSKTTLPNGIEEFIKLCTLSYGKVKLVL
KHNRYFVESQFPEVLQKLLKDPVIQECRLKAGTGADGDLEESQLTAKSALKINKPGPSTS
ADGTNGDETMNNGDSKPEETIPSDIFDFYEKIDKDDDDDDAEDLKIVSFEVSQENIEVLQ
KRCIEVEHPLLAEYDFRNDTRNPDINIDLKPSTMLRPYQEKSLRKMFGNGRARSGVIVLP
CGAGKTLVGVTAACTVRKRCLCLCTSGVAVEQWRSQFKMWSTADDSMICRFTSDAKDKPM
GCSICISTYSMIAHSTKRSWEAEQVMQWMQTQEWGLIVLDEVHTIPAKMFRRVLTIVQAH
CKLGLTATLVREDDKITDLNFLIGPKLYEANWLELQKKNYIAKVQCAEVWCPMTPEFYQE
YLNTRTRKKLLLYVNNPNKFRACQFLIRFHERRNDKIIVFSDNVFALKAYATRMNKPYLY
GPTSQGERLNILQNFQHNPKVNTIFVSKVADNSFDLPEASVLIQISSHGGSRRQEAQRLG
RILRAKKGAVAEEYNAFFYSLVSQDTMEVHYATKRQRFLANQGYSYKVITKLAGIEEEDL
AFSTKEEQAQLLQKVLAANEDEAEEEKDPAGPPQSKTVSKVIRRIGNMSSMSGADDAIYM
EVTKAQSTKTLHPLFKRFKTKK
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgggtgggggcacaaagagagaaaagaaatcaaaaggaaaaaagtcgaagaagtccaaa
aaggctgcagattcatacgaaccggacgatgaggactccaattatggagatgatgagcca
gtaggcgataaaggtctggtcccagaggtagccaagcagaatgcagaagaagcaatcact
gcccctgaggatgaatatggtgctaaagattacaggtctcttctcagtttgaagttggat
cacaatgccagacctatctgggtggcaccaaatggtcacatattcctggaggcgttttca
ccggtctacaaacacgcacatgattttctcatagcaatagcagagcccgtgtgccgacca
gagcatatccatgagtatcggctgacagcctactccctgtacgcagctgtgtcagtcggc
ctgcagactcaggacatcattgaatacctgaagaggttgagcaagactactttaccaaat
ggtatcgaggaattcatcaagttgtgtaccctgagttatggaaaagtgaagctcgtcctg
aaacataatcgatactttgttgaaagtcaattcccggaggtgctgcaaaaacttctgaaa
gatcccgtcattcaggagtgtcgtcttaaagcggggactggtgctgatggtgatttagag
gagtctcagttgacggcaaaatcggcactcaagatcaacaagccaggcccaagtacatca
gctgatggtaccaatggtgacgaaactatgaacaacggcgacagcaaaccggaagaaact
atcccgtcagacattttcgacttttacgaaaaaatagacaaagatgatgatgatgatgat
gctgaggacttgaagattgtctcattcgaagtcagtcaggagaatattgaagttttacag
aaaagatgtattgaggtggagcaccctcttttggctgaatatgacttcagaaatgacacc
agaaatcctgatatcaacattgatttgaagcccagcacaatgttgcgtccatatcaggag
aaaagcctcaggaagatgtttggaaatggacgtgccagatctggggtcattgtattacca
tgtggtgctggcaagacactagtgggagtgacagctgcctgcactgtgaggaaaaggtgt
ctctgcttgtgtacgtctggggtcgcagtcgagcagtggcggtcacagttcaagatgtgg
tcaactgccgacgacagcatgatctgtcggtttacatccgatgccaaggataagcctatg
ggctgctctatctgtatcagcacgtactcgatgattgctcattcgaccaagaggtcctgg
gaggctgagcaagtcatgcaatggatgcagacacaggagtggggactcattgtccttgac
gaggtccacacaattccagctaagatgttccgacgtgtgttaacgatcgtccaggctcac
tgcaaacttggtctgacagcaacgctagttcgagaagacgataagattacagatctgaat
ttcctcatcggaccaaaattgtacgaagcgaactggctagaactgcagaagaagaactat
attgctaaggtgcagtgtgcggaggtttggtgtccgatgacgcccgagttctaccaggaa
tatctcaacacacggacgaggaagaaattgttgctgtacgtgaacaacccgaacaagttc
cgagcgtgccagttcttaattcgcttccatgagagaagaaacgacaaaatcatcgtgttc
tctgacaatgtgttcgcattgaaagcttatgcaacaaggatgaacaagccctacttgtat
ggtccaacctcacaaggagaaaggctgaatattcttcagaacttccaacacaacccaaaa
gtcaacacaatattcgtctcaaaggttgccgataactcgtttgatttgccggaggcgagt
gtcttgatccagatctcatcccatggtggctccagacgtcaggaggcacagagacttggc
aggatcctcagggctaagaaaggtgctgtggccgaagaatataacgcattcttctactcc
ctcgtctcccaggatacgatggaagtgcactatgccaccaagcgacagcgtttccttgcc
aaccagggatacagttacaaggttatcacgaagctggctggaattgaggaggaagacctt
gctttttcaaccaaagaggagcaagcccagctgctgcagaaagtccttgccgccaatgag
gatgaagctgaggaggaaaaagatcctgctggtcctccacagtcaaagaccgtttcaaag
gtcatacgtcgtattggtaacatgagttccatgtcgggagcagatgacgccatctatatg
gaagtaacaaaagcacaaagcacgaagacgttacatccactcttcaagaggttcaaaacg
aagaaatga
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