Lineus longissimus (bootlace worm): 135501147
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Entry
135501147 CDS
T09977
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03013
Nucleocytoplasmic transport
llon03015
mRNA surveillance pathway
llon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135501147
09122 Translation
03013 Nucleocytoplasmic transport
135501147
03015 mRNA surveillance pathway
135501147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llon03019
]
135501147
03041 Spliceosome [BR:
llon03041
]
135501147
Enzymes [BR:
llon01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135501147
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135501147
Spliceosome [BR:
llon03041
]
Complex C
Other components
EJC/TREX
135501147
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135501147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Utp25_C
Motif
Other DBs
NCBI-GeneID:
135501147
NCBI-ProteinID:
XP_064649077
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All DBs
Position
17:15975990..15982392
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AA seq
429 aa
AA seq
DB search
MAENDVENELLDYEEEEQETANEGAGDATAKKDVKGTYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILSMDVLTQAKSGMGKTAVFVLATLQQLEVVEGQVSVLVLCH
TRELAFQISKEYERFSKYMTGAKIAVFFGGIAIKKDEDTIKKNCPHIVVGTPGRILALSR
SKALNLKHVKHFILDECDKMLEQLDMRGDVQEIFRATPHEKQVMMFSATLSKEIRPVCKK
FMQDPMEVYVDDDSKLTLHGLHQHYVKLKDTEKNRKMFDLLDVLEFNQVIIFVKSVQRCI
ALAQLLVEQNFPAIAIHRGMSQEERLDRYKKFKDFQKRILVATNLFGRGMDIERVNIVFN
YDMPENSDTYLHRVARAGRFGTKGLAITFVSDENDAQVLNDVQERFEVNITSLPDEIDIS
CYLDVGAAE
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggccgaaaatgatgtagagaatgaacttttggactacgaagaagaggagcaggagaca
gccaatgagggagccggcgatgcgaccgccaagaaggatgtcaagggcacctacgtatcc
atccacagctcaggcttcagggacttcctactcaagccagaactgctcagggccattgtc
gactgcggttttgagcatccgtcagaagttcagcacgagtgtattccccaggccattctc
tcgatggatgttctgacacaggccaaatctggtatgggcaagacagctgtttttgtgctc
gctactctacagcagctcgaggtcgtggagggacaggtatctgtccttgtcctctgccac
acccgagaattggccttccaaatctccaaggagtacgagcgcttcagcaagtacatgacc
ggcgccaagatcgctgtctttttcggaggcattgcgatcaagaaggatgaagacactatc
aagaagaactgtcctcacattgtcgttggcacaccaggcaggattctggcactctcgcgg
tccaaggccctcaatctaaaacatgtcaagcatttcatccttgatgagtgtgacaaaatg
ttggagcagttagatatgcgaggagacgtccaggagatcttccgagcaacaccccatgag
aaacaagtgatgatgttcagcgccacactttccaaggagatccgaccagtctgcaagaag
ttcatgcaagatcccatggaagtatatgtggatgacgactccaaactgaccctccatggt
ctccatcaacattacgtcaagttgaaagacaccgagaagaacaggaagatgtttgatctc
cttgatgtgttggagttcaatcaggtgatcatctttgtcaagtctgtacagcgctgcatc
gccctcgcacagctccttgttgaacagaacttcccagccattgccatacacagaggaatg
tcacaagaagaaaggttggaccgatacaaaaagttcaaagatttccagaagcgtatcttg
gtcgccaccaacttgtttggtcgtggtatggatatcgagcgagtaaacattgtgttcaac
tatgacatgccagagaattccgacacttatctccacagggttgcccgagctggacgattt
ggtaccaagggtctggccatcacgtttgtatcggatgagaatgatgcacaagtactgaat
gacgtccaggaaaggtttgaggtcaacattacatcgttacctgatgagatagacatcagc
tgctaccttgatgttggtgcagcggaatag
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