Lineus longissimus (bootlace worm): 135501196
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Entry
135501196 CDS
T09977
Name
(RefSeq) exosome complex component RRP4-like
KO
K03679
exosome complex component RRP4
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135501196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llon03019
]
135501196
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
135501196
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
135501196
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
135501196
NCBI-ProteinID:
XP_064649188
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All DBs
Position
17:15082224..15084894
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AA seq
291 aa
AA seq
DB search
MAVDIRLANTRVKKTDPDVDELQHLVTPGDVITTDAGFMRGHGTFMDSDKLHASVAGVVE
RVNKLICVNPLKTRYHGEVGDVIVGRIIDVAQKRWRVEAHSKLHSILLLSSVNLPGGELR
KRSEEDERRMRDYLVEGDLISAEVQSVYSDGSLSLHTRSLKYGKLGQGVLVRVSPSLVRR
RKTHFHNLPCGASIILGNNGYIWISPTVNEDTDNTGGFTQSMQPVQRVDREVIARLRNCV
VAMANNRMMLFDTSVLYTFEASQKYAIKELLKPEVQDEVVSLARQRLETES
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcgatattcgacttgcgaacacgcgtgtgaagaaaaccgacccagatgtcgat
gaattgcagcatttagtaactcctggagatgttataacgacggatgcagggtttatgaga
ggccatggcactttcatggacagtgacaaactccatgcttcagttgctggtgttgtggag
cgtgtcaataaactgatctgcgtgaatccattgaagacgagataccacggagaagttgga
gacgtgattgttgggcgcatcatcgatgttgctcagaagagatggcgggtggaggcgcat
tcaaaactacattcaatccttttgctatcgagtgtgaatttacctggtggtgaattgagg
aaaagatcagaagaagacgagagaaggatgagagactatttagtcgaaggagatctaatc
agtgccgaggtgcagtctgtatactctgatggctcactctcattacacaccagaagttta
aagtatggcaaactcggccagggtgtcttggtccgagtctcaccttctttagtcagacgg
agaaaaacccattttcataatctcccttgtggtgctagtattatattaggtaataatgga
tacatctggatatcaccaacggtgaatgaggacacagataatacaggaggattcacacag
agtatgcagccagtccagcgagtggacagagaagtcatagctcggttacggaactgtgtc
gttgccatggcaaataaccgaatgatgctatttgataccagtgtgctgtatacctttgag
gcttcacaaaagtatgctatcaaggagctcctcaaaccagaggttcaggatgaggtggtt
agtttggcgagacagcgactcgagacagaaagttag
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