Lineus longissimus (bootlace worm): 135501219
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Entry
135501219 CDS
T09977
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135501219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llon03019
]
135501219
03041 Spliceosome [BR:
llon03041
]
135501219
Messenger RNA biogenesis [BR:
llon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
135501219
Spliceosome [BR:
llon03041
]
Complex B
Other components
Prp19-related factors
135501219
Complex C
135501219
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_2
TPR_15
RPN7
DHR-2_Lobe_A
PPR
ARM_TT21_C
ARM_TT21
DALR_1
Motif
Other DBs
NCBI-GeneID:
135501219
NCBI-ProteinID:
XP_064649238
LinkDB
All DBs
Position
17:complement(11601944..11609828)
Genome browser
AA seq
855 aa
AA seq
DB search
MPISGDQQNIIFEEDDLPYEEDILRNPFSVKCWLRYIDFKKGAANKVVNLIYERALKELP
GSYKLWYNYLKLRRKQIRGRCITDPSYEDVNNAFERAFVFMHKMPRIWLDYCQFLIDQGK
IPRTRRTFDRALRALPITQHYRIWPLYLKFVKMYPLPETAVRVYRRYLKLQPENTEAFID
YLKSGDRLDEAAQRLADIINDDDFVSKEGKSKHQLWNELCELISKNPDKVKSLHVDPIIR
QGIKRYSDQIGLLWNSLADYFTRGGHFEKARDIYEEAVQTVITVRDFTQVFDAYSQFEES
MISAKMETTAELGPSEEDDLDLELRLARLEDLMDRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGKAREIINTYTEAVQTVEPKLATGKLHTLWTAFAKFYEDAGQVEDARIIFEKATKVP
YKHVDDLASVWCEWTEMELRHENYEEALKLMQKATAPPPRKVAYHDEAETVQARVHKSLK
VWSMYADLEESFGTFKSCKAVYDRIIDLKIATPQIIINYGMFLEENKYYEEAFRAYERGL
ALFKWPNVYDIWTTYLTKFIERYEGKKLERARDLFEQCLEGCPAKFAKTLYLLYAKLEED
HGLARHAMAVYDRATRGVLPEEQYEMFNIYIKRVAEIYGVTHTRAIYEKAIEALNEEQTV
DMCQRFADLERKLGEIDRARAVYAHCSQISDPRVYPGFWNIWKDFEMKHGNEDTLREMLR
IKRSVMATYNTQVNFMSSQMLAATQGQKQDETQGEAPPAGGEDDQMRKLEERARQLAEEA
VQEKSKPDKGILFVRSTTTNEELSDMTKTNNPEEIDIDADYSTDEDEQVEEVQIGQQPVP
SAVFGDLDKDDSDSD
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atgccaatatctggagaccagcaaaatatcatattcgaagaagatgaccttccatatgaa
gaagatatcttgagaaatcctttttctgtaaaatgttggttgcgatatatcgacttcaag
aaaggtgccgcaaacaaagtggtcaacctcatatatgagagggctttgaaggaactgcca
ggaagttacaaactatggtataattacttgaagttacgccggaagcaaatccgaggtcgc
tgtatcactgacccatcatatgaggacgtcaacaatgcatttgaaagagcatttgtgttc
atgcataagatgccgagaatctggctggactattgtcagttcctgatagaccaaggaaaa
ataccgagaactcgacgaacctttgatcgtgccctacgagcccttcccatcacccaacat
tacagaatctggccactgtatctcaagtttgtgaaaatgtacccattacctgaaacagct
gtcagagtctacaggagatacctcaagcttcagccagagaataccgaagcgttcatagac
tacctgaaatcaggtgaccgccttgatgaagcagcacaaagacttgctgacatcataaat
gacgacgactttgtctctaaggaaggcaaatcgaagcaccagctttggaatgaattgtgt
gagctcatctcaaagaatccagacaaggtcaagtcgttacacgtagacccgattattcgc
cagggaatcaaacgctactctgatcagattggtttactatggaactcattggcggactat
ttcaccagaggtggtcatttcgaaaaggctcgggacatatatgaagaggccgtgcagact
gtgatcacagtgcgcgacttcactcaggtgttcgacgcatattctcaattcgaagaaagt
atgatcagtgccaagatggaaacaacggcagaattgggaccatcagaagaagatgacctt
gaccttgagttgagattggcgcgtttagaggatctgatggatcggcggcctctcttgctg
aacagtgtgctacttcgacaaaatcctcataatgtccacgagtggcataaacgagtcaag
ttgtatgaaggcaaggcgagggagatcatcaacacatacactgaagcagtccagacagtt
gaacccaaactggccacaggaaagttacatacgctctggacagcatttgctaagttttat
gaagatgcaggacaggtagaagatgcccgaatcatatttgaaaaggcaaccaaagtaccg
tataaacacgtggatgacttggcgtcagtctggtgtgagtggacagaaatggaacttagg
catgagaattatgaagaagcgctaaagctgatgcaaaaagccacagcaccacctccaagg
aaagtggcgtatcatgatgaggcggagactgtgcaagcgcgggtccataagtccctgaaa
gtttggtcaatgtatgcagatttagaggagagctttggcactttcaaatcttgtaaagca
gtttatgatcgaatcatcgaccttaaaatagccacacctcaaatcatcatcaactatggt
atgtttttggaggaaaataagtactacgaggaggcattcagggcatatgaaagaggcctt
gccttgttcaaatggccgaatgtctacgacatctggacgacatatttgacaaagtttatc
gagagatatgagggcaaaaaactggaacgagcgcgagatctttttgagcagtgtcttgag
ggatgtccggccaaatttgcgaagaccctttaccttctttatgccaagcttgaagaggac
cacggattggctcgtcatgcaatggcggtctatgatagggcgacacgtggtgtgctccca
gaggagcaatatgagatgttcaacatctacatcaagagagtggcggaaatctacggcgtc
acccacacaagggcgatctatgaaaaggcgattgaggcattgaatgaggaacagactgtt
gacatgtgccagcgctttgctgacctcgagcgaaagctgggagaaattgatcgtgctcgg
gccgtctatgctcattgttcacaaattagtgatccaagggtttatccaggcttctggaac
atatggaaagactttgagatgaaacacggaaatgaagacactctgcgagaaatgttacga
atcaagcgtagtgtcatggcgacgtacaacacacaggtcaacttcatgtcatcgcagatg
ttagccgctacgcagggccagaaacaagatgagacacaaggtgaagcgcccccagctggt
ggtgaggatgaccagatgcgaaaattggaggaacgtgctcgtcagttggcagaggaagct
gtacaagaaaaaagcaaacccgataagggaattctctttgtcaggagcaccaccacgaat
gaagaactgagtgacatgacaaaaacaaacaacccggaggaaatcgacattgatgcagat
tattctacagatgaggatgagcaggttgaagaagttcaaattggtcagcagcctgtgcca
tctgctgtattcggtgatttagataaggatgattcagactcagactaa
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