Lineus longissimus (bootlace worm): 135503249
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Entry
135503249 CDS
T09977
Name
(RefSeq) pre-mRNA-processing factor 6-like
KO
K12855
pre-mRNA-processing factor 6
Organism
llon
Lineus longissimus (bootlace worm)
Pathway
llon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
llon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135503249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
llon03041
]
135503249
Spliceosome [BR:
llon03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
135503249
Complex C
U5 SnRNP specific factors
135503249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_16
HAT_Syf1_CNRKL1_N
TPR_2
TPR_17
TPR_8
TPR_CcmH_CycH
FAT
NatA_aux_su
TPR_9
YfdX
CAF1A_acidic
TPR_21
Motif
Other DBs
NCBI-GeneID:
135503249
NCBI-ProteinID:
XP_064652796
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All DBs
Position
19:complement(3214774..3224523)
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AA seq
925 aa
AA seq
DB search
MAVQSMVSKRKKEFIGLPAPLGYVPGLGRGATGFTTRSDIGPARDADDISDDRHAPPKKK
KDDDEDDDEDLNEANYDEFTGFGGSLCGKDPYDKDDEEADQIYEAIDKRMEEKRKERREA
RLQEELEKYRQERPKIQQQFSDLKRELAQVSSEEWVNIPEVGDARTKKQRNPRKEKYTPV
PDSVLHQAAMSGETTTAMDVMEQRYGGLVSPFPGTGTPQADIDMKKIGQARNTLMDIKLT
QVSDSVSGQTVVDPKGYLTDLQSMIPNHGGDINDVKKARLLLRSVRETNPKHPPAWIASA
RLEEVTGKLQTARNLIMKGCEECVKSEDIWLEAARLMPGDQAKAVVTQAVRQIPHSVRIW
IKAADLEMELKPKKRVFRKALENIPNSVRLWKAAVELEDETDARIMLSRAVECCPTSVEL
WLALARLETYENARKVLNKARENIPTDRQIWITAAKLEEANGNIHMVEKIIARALQSLRA
NMVEINRDQWIKDAEDCEKAGSINTCQEIVQSVISVGIEDEDRKHTWMEDAESCATNGAV
ECARAIYAFALQEFASKKSIWLRAAYFEKNHGTRDSLEALLQRAVAHCPKAEVLWLMGAK
SKWMANDVPAARSILALAFQANPNSEEIWLAAVKLESENNEFERARRLLQKARSSAPTAR
VMMKSVKLEWCLNDMKKAQELLEESVKHYPDFPKLWMMKGQIDEQQKDLNGARAAYNQGL
KKCPAAVPLWLLLSRLEERSGNITKARSILEKARLKNPHSPELWLEAVRVENRGGLKNIG
QTLMAKAMQECGSSGILWAEAIFMEARPQRKTKSVDALKKCEHDPHVLLAVSKLFWAERK
INKAREWFTRTVKLDQDSGDAWSNFYKFELMHGAEEQQDEVLKRCTVIEPHHGEAWCKVS
KHIDNWRLKTSEILPLVATSLPVPV
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggcggtccagtcaatggtttcgaagagaaagaaggagtttattggactcccagctcca
cttggttatgttcccggtctaggaagaggagctacaggtttcaccacccgatctgatatc
ggtccagccagggatgctgatgacatctcggatgaccgtcacgcgccaccgaagaagaaa
aaagacgatgatgaagacgatgatgaagatttgaatgaagcaaattatgatgagttcaca
ggtttcggtggaagtttgtgcggtaaagatccttatgataaagacgacgaggaagctgac
caaatttacgaagcgatcgataaacggatggaggagaagcgaaaagagcgacgagaggcg
cggcttcaggaggagctggagaaatatcgtcaggaacgtccaaagatccagcagcagttt
tccgatttgaagcgagaattggcgcaagtctcatcagaagaatgggtgaacatcccagaa
gttggcgacgccagaacgaaaaaacagcgaaatcctcgaaaagagaaatacactccagtg
cctgactcagtgttacaccaagcagccatgtctggtgaaaccacgactgccatggatgtg
atggagcagagatatggtggcctggtgtcccccttcccgggtaccggaactcctcaagcc
gatattgatatgaagaagattggccaggccaggaacacgttgatggacatcaagttaaca
caggtttctgactccgtcagtggacagacagtagttgacccaaaaggctacctgactgat
ctacaatctatgatcccaaatcacggcggtgatataaacgacgtcaagaaggcacgcttg
ctcctccgctcggtccgcgagacgaatcccaagcatccgcctgcgtggattgcatcggct
cgtcttgaagaggtcacaggcaagctccagacagctaggaatcttatcatgaagggctgt
gaggagtgtgtgaagagtgaggacatctggttggaggctgccaggctcatgccaggagat
caagccaaggcagtcgtgacacaggcagtccgacagataccccactcggtcagaatctgg
atcaaagccgccgatctggaaatggaattaaagccaaagaagagagtgttcaggaaagcg
cttgagaatattccaaactctgttagactgtggaaggccgctgtggagctggaggatgag
acagacgccaggattatgttgagtcgagcggtcgagtgctgtccgacaagtgtggagttg
tggttggcccttgcgcggctcgagacgtacgaaaatgcacgtaaagtcttgaacaaggcg
agagagaacattccaacggatcgacagatttggatcactgccgcaaagttggaggaagcc
aatggaaatatacacatggtggagaagatcattgccagagcgctgcagtcgttgcgagcg
aacatggttgagatcaaccgcgatcagtggatcaaagatgcggaggattgcgagaaggcg
ggaagtatcaacacctgtcaggagattgtgcaatcagttatcagtgtgggtattgaggat
gaagataggaaacacacatggatggaagacgcagaaagttgtgccaccaacggggccgtc
gaatgtgctagggcaatttacgcgtttgccctgcaagaattcgccagcaagaaaagcatc
tggctgagagcggcctattttgagaagaatcacggaacccgagactcccttgaggctctg
ctgcagagggccgtggctcattgcccaaaggctgaagtcctgtggcttatgggcgcaaag
tccaaatggatggcaaatgacgtaccagcggcaagaagcatcctagcgttagccttccag
gccaatccgaacagcgaagagatctggttggctgccgtcaaactcgagagcgagaataat
gagtttgaacgggcgcggcgtctgctgcagaaggcgcgatcgagcgcccccacggctcgt
gtgatgatgaagtctgtgaagctcgagtggtgtttgaatgatatgaagaaggcacaggaa
ctgctcgaggagtcggtcaaacattacccagactttccaaagctctggatgatgaaaggc
cagattgatgagcagcagaaggatctgaatggagctagagctgcttacaaccaagggttg
aaaaagtgtccggctgccgttcctctgtggcttcttctgtcgcgattagaggaacgaagt
gggaacatcacgaaagcccggtccatcctagagaaagcacggttgaagaaccctcattct
ccggagctttggctcgaggcggtgcgggttgagaaccgaggaggtctcaagaacattggt
caaactttgatggcaaaagcaatgcaagaatgtggctcgtcaggcattctttgggcagag
gcaatcttcatggaggccaggccgcagaggaaaacaaaatccgtcgacgccctgaagaag
tgcgagcacgatccccacgttctgttggcggtctcgaaattgttctgggcagaaaggaag
atcaataaggcgagagaatggttcacacggacggtcaagctcgaccaggactccggagac
gcttggtcgaatttctataagttcgagctgatgcatggcgcagaggaacagcaagacgag
gtcctgaagaggtgcacagtgattgagcctcatcacggagaagcctggtgcaaggtctcg
aagcatatcgacaactggagactcaagacgtcagaaatcctaccgctcgttgctacctca
ttgcccgtgccagtgtga
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