Litorivicinus lipolyticus: GH975_02545
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Entry
GH975_02545 CDS
T06278
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
llp
Litorivicinus lipolyticus
Pathway
llp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GH975_02545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llp03019
]
GH975_02545
03009 Ribosome biogenesis [BR:
llp03009
]
GH975_02545
Enzymes [BR:
llp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GH975_02545
Messenger RNA biogenesis [BR:
llp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GH975_02545
Ribosome biogenesis [BR:
llp03009
]
Prokaryotic type
rRNA helicases
GH975_02545
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Transketolase_C
Motif
Other DBs
NCBI-ProteinID:
QGG79504
UniProt:
A0A5Q2Q9B3
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All DBs
Position
499271..501157
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AA seq
628 aa
AA seq
DB search
MTTEITFADLALPTAILENLTRIGYEKPSAIQAASIPLLLAGEDLLGTAQTGTGKTAAFA
LPALALIDPNSSDTQVLVLTPTRELAIQVAEAFQTYSQGMRGFHVLPIYGGQPMSGQLRG
LRRGVQVVVGTPGRVMDHLRRGTLKLDNLREVILDEADEMLRMGFIDDVTWILEHAPKER
QVALFSATMPRPIRRLAEQYLTNPKEISIQAQSSVVDKIDQAYWLVSGVNKLDALTRILE
VETFDGLVMFVRTKNQTIEMAQKLEARGYSAKAINGDMTQKLREQTIGELKSGTIDILVA
TDVAARGIDVPRITHVINYDIPIDPEAYVHRIGRTGRAGRSGKAILFVAPRERRLLRSIE
NLTKTRIQAMDIPTRDQVSEKRINDFKSQIGEALEHPKLSFFQQMVTDYLEESGVELLDL
AAALACLGQKDKLLLTDERPERAERQERAPRDRGDRPAPFSERTEWHEKQRERRVHDDSG
MGFYRISVGYQHSVRPGDIVGALVNEADIDKASIGRIQLFDDFSVVQMPVGMPDNLLSHL
KRLKIRGQSIVINPIDVSEVPEQKRPPRSDKPRGDRPYGDKPRGDRPHGDKGGYRGDKER
SKSGFKHRKSNDSGFDPARAPKKRPSRD
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgactaccgaaattaccttcgccgacttggcgttgccgaccgctattcttgaaaattta
acgcgcattggctacgaaaagccctcggccattcaggccgccagtatcccgcttttgctg
gccggcgaagacctgttgggcaccgcccaaaccggaaccggcaaaaccgccgcgttcgct
ttgcctgcattggcgttgattgatcccaattccagcgacacccaagtgttggtattgacg
ccgacgcgtgagttggcaattcaggtcgccgaagccttccaaacttacagccaaggcatg
cgtggttttcacgtgttgccgatctacggtggccagcccatgagcggccagctgcgtgga
ttgcgccgtggcgttcaagtcgtggtcggtacgccgggccgagtcatggatcacctgcgc
cgcggcaccttaaagttggacaacctgcgcgaagtgatcttggacgaagcggacgaaatg
ctgcgcatgggctttattgatgacgtcacctggattttggagcacgcaccgaaagagcgt
caggttgcgttgttctcggccaccatgccgcgtccgatccgtcgcttggcagagcagtac
ctgaccaaccccaaagaaatctccattcaggcgcagtccagcgtggtcgacaaaatcgac
caggcctactggctggtgtcgggcgttaacaaattggacgccctgacccgcatcctggaa
gtggaaacctttgacggcctggtgatgtttgttcgcaccaaaaaccagaccatcgaaatg
gcccagaagcttgaagcccgtggttacagcgccaaagcgattaacggcgatatgacccag
aagctgcgtgagcagaccattggtgagttgaaaagcggcactatcgatattttggtggcc
actgacgtcgcagcgcgtggtattgacgtaccgcgtatcacccacgtgatcaactacgac
attccgatcgatcccgaagcctacgtccaccgtattgggcgtaccggtcgagccggccgt
tcgggcaaggcgatcttgttcgtcgcgccgcgcgagcgtcgtttgttgcgttcgatcgag
aacttgaccaagacccgcattcaggcgatggacattccgacccgcgatcaggtcagcgaa
aagcgtattaacgacttcaagagccagatcggtgaagcgctggaacaccccaagctgagc
tttttccagcaaatggtcacggactacctggaagaatcgggcgttgaattactcgacctg
gcagccgcgttggcgtgcctgggtcaaaaagacaaattgttgctgacggacgagcgccca
gaacgcgctgaacgtcaagagcgtgcgccgcgtgatcgcggtgaccgtccggcaccgttt
tcagagcgcaccgaatggcacgaaaaacagcgtgagcgtcgcgtacatgacgactcgggc
atgggtttctaccggatttcggtcggctaccagcacagcgtgcgtccgggtgacatcgtc
ggcgccctggtcaacgaagcggacattgataaggcctccattggtcgtatccagctgttt
gacgatttctcggtcgtacagatgccggtcggtatgcctgacaacctgttgagccatctg
aagcgtttgaaaattcgcggtcagagcatcgtcatcaatccgatcgacgtcagcgaagtg
cccgagcaaaagcgtccgccgcgcagcgacaagccccgcggcgaccgtccttacggtgac
aagccccgtggcgatcgtccgcacggcgacaaaggcggctaccgcggcgacaaagaacgc
agcaagtccggctttaagcaccgcaagtctaacgactcgggctttgacccggcccgcgca
ccgaagaagcgtccgtcgcgcgactaa
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