Litorivicinus lipolyticus: GH975_08080
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Entry
GH975_08080 CDS
T06278
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
llp
Litorivicinus lipolyticus
Pathway
llp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GH975_08080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llp03019
]
GH975_08080
Enzymes [BR:
llp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GH975_08080
Messenger RNA biogenesis [BR:
llp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GH975_08080
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Tetrabrachion
Utp25_C
DUF7464
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QGG80529
UniProt:
A0A5Q2Q7N1
LinkDB
All DBs
Position
complement(1601404..1602609)
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AA seq
401 aa
AA seq
DB search
MSDTAWTPEQFEVAVADDKTRFHDLDLPHALLRAIQDLGFEYCSPIQAESLPLCLDGYDM
IGKAQTGTGKTAAFLVNLIDTFLRDPRPNRKPGSPRALVLAPTRELVMQIAKDAEGLCKY
TDLNVQEIVGGIDYQKQREDLRAAPCDIMVATPGRLIDFLRQNEVNLRNVEILVLDEADR
MLDMGFIPDVRRIVRACPHREKRQTILYSATFSQAIMDLVERWTVDPKSVIIEPDSVATD
TVEQIVYITTADDKYNLLKNLILKGDLHKVMVFANRRTIVNRLATRLQKDGIEAAELSGD
VPQKKRISTLENFKEGRVRVLVATDVAGRGIHIDGVGHVVNFTLPEEAEDYVHRIGRTGR
AGSEGTSISFADEDDGHLIPAIEGYINRKLPSERPSEDLLG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccgcctggacccctgaacaattcgaagtcgccgtggctgacgataaaacg
cgtttccatgacttggatttgccacacgcactgttgcgcgccattcaggatctgggtttc
gagtattgctcaccgattcaggctgaatcattgccgttgtgtttggacggttacgacatg
atcggcaaagcccagaccggtaccggtaaaaccgccgcctttttggtcaacctgattgac
accttcttgcgtgacccgcgccctaaccgcaagcccggatcaccgcgcgcgctggtgttg
gcgccgacccgcgagttggtcatgcaaattgcgaaagacgcggaggggctttgcaagtac
accgaccttaacgtccaagaaatcgtcggcggcattgattaccagaaacagcgcgaagac
ctgcgagcggcaccctgcgacatcatggtggcgacaccggggcggttgattgattttctg
cgccaaaatgaagtcaacctgcgcaatgttgaaatattggtgttggacgaagctgaccgc
atgctggacatgggctttatcccggacgtgcgccgtatcgtgcgtgcgtgcccgcatcgc
gaaaaacgtcaaaccattttgtacagcgcgaccttcagccaggccatcatggacttggtg
gagcgttggacggtcgaccccaagagcgtgatcatcgagccggacagtgtcgccaccgac
accgtcgaacagattgtctatatcaccaccgcggacgataagtacaacctgctcaaaaac
ctgattttgaagggcgacctgcataaagtgatggtgtttgcgaaccgccgcacgatcgtt
aatcggttggcgacgcggctgcaaaaagacggtatcgaggcggctgagctgtccggcgac
gtgccccagaaaaaacgtatctcgacgctggaaaacttcaaagaagggcgggttcgcgta
ctcgtagcgaccgacgttgccggccgaggcattcacattgacggggtcggccatgtagtc
aatttcacgctgcccgaggaagccgaggactacgtgcaccgcatcggtcgtactggtcgt
gccggtagtgagggcactagcatcagctttgccgacgaagatgacggtcacctgatccct
gcgatcgaaggctatatcaatcgcaagctgccgtcggaacgcccgagcgaagacctactc
ggctaa
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