Lactococcus lactis subsp. lactis IO-1: lilo_0004
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Entry
lilo_0004 CDS
T02485
Symbol
rexA
Name
(GenBank) ATP-dependent exonuclease subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
lls
Lactococcus lactis subsp. lactis IO-1
Brite
KEGG Orthology (KO) [BR:
lls00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lls03400
]
lilo_0004 (rexA)
Enzymes [BR:
lls01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
lilo_0004 (rexA)
DNA repair and recombination proteins [BR:
lls03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
lilo_0004 (rexA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
DEAD
AAA_30
AAA_22
ResIII
KdpD
AAA_7
AAA_16
Motif
Other DBs
NCBI-ProteinID:
BAL50008
LinkDB
All DBs
Position
6065..9676
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AA seq
1203 aa
AA seq
DB search
MSEVKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKK
AASELRMRLERDLKKARQESSDENQARRLTLALHNLSNADIGTMDSFTQKLTKTNFNRVN
IDPNFRILADQTESDLIRQEVFEQLVESYLSGDEGLNISKEKFEELIKNFSKDRNIAGFQ
KVVYTTYRFASATENPIKWLENQFLKGFETYKSLTDLSADFSADIKENLLIFFELLETSL
TNGVIAKKGAGRDKANLILDNKNELLEAITTKDFATFTELFLSIDTDIRVGSSKDEILSA
LKKDFSAQKQDLVGSKSKPGEIRKFVDKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSY
LERKKNENAFEYSDIAHFAIEILEENPDIRETLREHYDEIMIDEYQDTSHTQERMLELLS
NGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFRSRGEVLTFTN
DIFKHLMDEKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETDESEVR
ISDGEIKGAAQEIKELIEAGVEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFL
KSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISTQGSHDLRFWDKILLS
LNKEGQNPELINPSLEDKLKAFYKKFTEWRKLVNQVAIHDLLWKIYTETYYFDYVGALKN
GEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTF
HKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSRENGLGMKLIADLKDEADVITDFPYALV
KMETFPYMVNKDLKQRAALSEEMRVLYVAFTRARKKLYLVGKIKETDKKSGLDLYDNASL
EGKILEDKFRNSSRGFQHWILALQNATKLPMKLNVYTKEELEAEKLEFTSQPDFKKLVEE
SEKFDNIMAYSDEIQKAQKIMNYEYPNQAATELSSIQTPSQVKKRSYEKQLQVGEIQPIS
EFTRVKKLDFSDFGPKKVTAAEIGSATHSFMQYADFSQADLFSFQATLDEMGFDEKIKNQ
IDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFAKEQYIVRGICDGFVKLTDKI
VLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQVDKYLILLGGPQQVFVEK
LDD
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagtaaaattaactccagagcaaaatgaagccattcatagttctggtaagaat
attctagtttcagcgagtgctggttccggaaaaacttttgttatggctcagagaattgtc
gagaaagtcaaacaaggaattgaaattgatcgacttttcatttccacatttacaaaaaaa
gcagcaagcgaattacggatgcggcttgagcgagatttaaaaaaagccagacaagaaagt
tctgatgaaaatcaagctcgtaggttgacacttgctttacataacttgtcaaatgctgat
attggaactatggatagtttcacccaaaaattgacaaaaacgaatttcaatcgagtaaat
attgacccgaatttccgaatcttagctgatcaaacagagagtgatttaattagacaagaa
gtttttgaacaattggttgagtcttatctatcaggagatgaaggattgaatatttcaaaa
gaaaaatttgaagaacttataaaaaatttttctaaagacagaaatattgctggttttcaa
aaagtggtttacactacttaccgttttgcatcagcaactgaaaatccaataaagtggtta
gaaaatcaatttttaaaaggttttgaaacatataaatcactgacagacttgtctgcagat
ttttcagcagatataaaagagaatttactgatattttttgaacttctagaaacttcatta
accaatggagtaattgctaaaaaaggggctggacgtgataaggccaaccttattttagat
aataaaaatgaactcttagaagcaataaccactaaagattttgcaactttcacagaacta
tttttatcaatagatacagatattcgagtgggttcttcaaaagatgaaatactttcggct
ctgaaaaaagatttttcagcacaaaagcaagacttagtcggctcgaaatccaaacctgga
gaaattcggaagtttgttgataaaataaaacatggtcagttgattgaaaaatatcaaaat
caagcatttgaaatcgcagaaaatttacaaaaatttgttattgagttttaccaaagttat
ttagaacgtaaaaagaatgaaaatgcttttgagtactctgatatcgcacactttgccatc
gaaattttagaggaaaatccagatatacgtgaaactttaagagaacattatgatgaaatc
atgattgatgagtatcaggataccagccacactcaggagcgaatgctggaacttttatcg
aatggacataatctcttcatggttggtgatattaagcaatcaatttatggctttcgttta
gctgaccctggcctctttttagaaaaatataaagactatgccaagacagaaaatccaaat
caattaattcgcctaaaagaaaactttcgttcacgtggtgaggttttaacatttacaaat
gatatctttaaacacctgatggatgaaaaattaggtgagatgacttatggcaaagaagaa
gccttagttcaaggaaacattactgattatccagttgaatctgagaaagatttttatcca
gaacttcttttatacaaagaaaatacaagtgatgaagaaacagatgaatccgaagtaaga
atttcggatggagagattaaaggagcagctcaagaaataaaagaattgattgaagctgga
gttgagccaaaagatatagcaatcttggttcgttctaaatcaaataataataaaattgag
gatattctgcttagttacgatattccggtcgttcttgatgaaggacgagttgattttttg
aaatcaatggaagtcttaattatgctagacgttttacgagcaattgataatccactctat
gatttatcattggttgcgatgttaaggtctccgttatttggatttaatgaagatgaatta
acgagaatcagtactcaaggaagccatgaccttcgattttgggataaaattcttttgtca
cttaataaagaaggacaaaatccagaacttatcaatccttccttagaggacaagcttaaa
gcattttacaagaaatttacagagtggcgtaaacttgtaaaccaagttgcaattcatgat
ttactttggaaaatatatacagaaacctactattttgactatgttggtgccttaaaaaat
ggtgaaatgcgtcaagcgaacttacaagccttagcggttcgagcagaatcatatgaaagt
tctggttataaaggattatttaaatttgtaagattaatcaacaaatttatggaacaaaat
aatgatttagcttctgttaatataaaacttcctcaaaatgctgttcgagtgatgaccttc
cataaatcaaaaggattagaatttgattatgtctttttaatgaatttacaatctcgtttc
aacgatcgtgatttgaaagaagatgttatcctaagtcgtgaaaatggtttaggaatgaag
cttattgccgatttaaaggatgaagcagatgttataactgatttcccttatgctttagtg
aaaatggaaacattcccttatatggtgaataaagacttaaaacaaagagcagctctctca
gaagaaatgcgtgttttatatgttgcatttacaagagcaaggaaaaaactttatcttgtc
ggaaaaataaaagaaacggataaaaaatcaggacttgacctttacgataatgcaagttta
gaaggaaagattttagaagataaatttcgtaattcaagtcgcggttttcaacactggata
ttggcgcttcaaaatgccacaaaacttccgatgaaactcaatgtctacacaaaagaagag
ttggaagcagaaaaacttgaatttacaagtcaacctgatttcaaaaaattggtcgaagaa
tcggaaaaatttgataatatcatggcctattctgatgaaatacaaaaagctcaaaaaatt
atgaattatgaatatccaaatcaagcagcaacagagctttcaagtattcaaacaccaagt
caggttaaaaaacgaagctatgaaaaacaattacaagtgggtgaaattcaaccgataagt
gaatttactcgggtcaaaaagctagatttttctgattttggtcctaagaaagttactgct
gcagaaatcggttcggcaacacatagttttatgcagtatgcagatttttctcaagcagat
ttatttagttttcaagcgacacttgatgaaatgggatttgatgaaaaaataaaaaatcaa
attgatattgctaaaattttgactttgtttgatacagatttcggtcagtttttatcagaa
aatgttgataaaacagttaaagaagcaccattttcaatgttgagaacagatgaatttgct
aaagagcagtatattgttcggggaatttgtgatggatttgttaaacttactgataaaatc
gttctatttgattataagacagatagatttacaagttcttcagctatttctgaaataaaa
gagcgttatagagatcagatgaatctttatagtgaggctttgaaaaaagcctacgatgtc
aaccaagttgacaagtatctcattttattaggaggccctcagcaagtttttgttgaaaaa
ctagatgattag
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