Lactococcus lactis subsp. lactis CV56: CVCAS_0004
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Entry
CVCAS_0004 CDS
T01964
Symbol
rexA
Name
(GenBank) ATP-dependent nuclease, subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
llt
Lactococcus lactis subsp. lactis CV56
Brite
KEGG Orthology (KO) [BR:
llt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llt03400
]
CVCAS_0004 (rexA)
Enzymes [BR:
llt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVCAS_0004 (rexA)
DNA repair and recombination proteins [BR:
llt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
CVCAS_0004 (rexA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_12
DEAD
AAA_30
AAA_22
ResIII
KdpD
AAA_7
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADZ62672
LinkDB
All DBs
Position
6422..10033
Genome browser
AA seq
1203 aa
AA seq
DB search
MSEVKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKK
AASELRMRLERDLKKARQESSDENQARRLTLALQNLSNADIGTMDSFTQKLTKTNFNRVN
IDPNFRILADQTESDLIRQEVFEQLVESYLSEDDGLNISKEKFEELIKNFSKDRNIAGFQ
KVVYTIYRFASATENPIKWLENQFLKGFETYKSLTDLSADFSADIKENLLIFFELLETSL
TNGVIAKKGAGRDKANLILDNKNELLEAITTKDFTTFTELFLSIDTDIRVGSSKDEILSA
LKKDFSAQKQDLVGSKSKPGEIRKFVDKIKHGQLIEKYQNQTFEIAENLQKFVIEFYQSY
LERKKNENAFEYSDIAHFAIEILEENPDIRETLREHYDEIMIDEYQDTSHTQERMLELLS
NGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFRSRGEVLTFTN
DIFKHLMDEKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETDESEVR
ISDGEIKGAAQEIKKLIEAGVEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFL
KSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDELTRISTQGSHDLRFWDKILLS
LNKEGQNPELINPSLENKLKAFYKKFTEWRKLVNQVAIHDLLWKIYTETYYFDYVGALKN
GEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTF
HKSKGLEFDYVFLMNLQSRFNDRDLKEDVILSRENGLGMKLIADLKDEADVITDFPYALV
KMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLVGKIKETDKKSGLDLYDNASL
EGKILEDKFRNSSRGFQHWILALQNATKLPMKLNVYTKEGLEAEKIEFTSQPDFKKLVEE
SEKFDNIMAYSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKRSYEKQLQVGEIQPKS
EFTRVKKLDFSDFGPKKVTAAEIGSATHSFMQYADFSQADLFSFQVTLDEMGFDEKIKNQ
IDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFAKEQYIVRGICDGFVKLTDKI
VLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQVDKYLILLGGPQQVFVEK
LDD
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagtaaaattaactccagagcaaaatgaagccattcatagttctggtaagaat
attctagtttcagcgagtgctggttccggaaaaacttttgttatggctcaaagaattgtc
gagaaagtcaaacaaggaattgaaattgatcgacttttcatttccacatttacaaaaaaa
gcagcaagcgaattacggatgcggcttgagcgagatttaaaaaaagccagacaagaaagt
tctgatgaaaatcaagctcgtaggttgacacttgctttacagaacctgtcaaatgctgat
attggaactatggatagtttcacccaaaaattgacaaaaacgaatttcaatcgagtaaat
attgacccgaatttccgaatcttagctgatcaaacagagagtgatttaattagacaagaa
gtctttgaacaattggttgagtcttatctatcagaagatgatggattgaatatttcaaaa
gaaaaatttgaagaacttataaaaaatttttctaaagacagaaatattgctggttttcaa
aaagtagtttacactatttaccgttttgcgtcagcaaccgaaaatccaataaagtggtta
gaaaatcaatttttaaaaggttttgaaacatataaatcactgacagacttgtctgcagat
ttttcagcagatataaaagagaatttactgatattttttgaacttctagaaacttcatta
accaatggagtaattgctaaaaaaggggctggacgtgataaggccaatcttattttagat
aataaaaatgaactcttagaagcaataaccactaaagattttacaactttcacagaacta
tttttatcaatagatacagatattcgagtgggttcttcaaaagatgaaatactttcggct
ctgaaaaaagatttttcagcacaaaagcaagacttagtgggctcgaaatccaaacctgga
gaaattcggaagtttgttgataaaataaaacatggtcagttgattgaaaaatatcaaaat
caaacatttgaaatcgcagaaaacttacaaaaatttgttattgagttttaccaaagttat
ttagaacgtaaaaagaatgaaaatgcctttgagtactctgatatcgcacactttgccatc
gaaattttagaggaaaatccagatatacgtgaaactttaagagaacattatgatgaaatc
atgattgatgagtatcaggataccagccacactcaggagcgaatgctggaacttttatcg
aatggacataatctcttcatggttggtgatattaagcaatcaatttacggctttcgttta
gctgaccctggcctctttttagaaaaatataaagactatgccaagacagaaaatccaaat
caactaattcgcttaaaagaaaactttcgttcacgtggtgaggttttaacatttacaaat
gatatctttaaacacctgatggatgaaaaattaggtgagatgacttatggcaaagaagaa
gcattagttcaaggaaatattactgattatccagttgaatctgagaaagatttttatcca
gaacttcttttatacaaagaaaatacaagtgatgaagaaacagatgaatccgaagtaaga
atttcggatggagagattaaaggagcagctcaagaaataaaaaaattgattgaagctgga
gttgaaccaaaagatatagcaatcttggttcgttctaaatcaaataataataaaattgag
gatattctgcttagttacgatattccggttgttcttgatgaaggtcgagttgattttttg
aaatcaatggaagtcttaattatgttagatgttttacgagcaattgataatccactctat
gatttatcattggttgcgatgttaaggtctccgttatttggatttaatgaagatgaatta
actagaatcagtactcaaggaagccatgaccttcgattttgggataaaattcttttgtca
cttaataaagaaggacaaaatccagaacttatcaatccttccttagagaacaagcttaaa
gcattttataagaagtttacagaatggcgtaaacttgtaaaccaagttgcaattcatgat
ttactttggaaaatatatactgaaacctactatttcgactatgttggtgccttaaaaaat
ggtgaaatgcgtcaagcgaacttacaagccttagcagttcgagcagaatcatatgaaagt
tctggttataaaggattatttaaatttgtaagattaatcaacaaatttatggaacaaaat
aatgatttagcttctgttaatataaaacttcctcaaaatgctgttcgagtgatgaccttc
cataaatcaaaaggattagaatttgattatgtctttttaatgaatttacaatctcgtttc
aacgatcgtgatttgaaagaagatgttatcctaagtcgtgaaaatggtttaggaatgaag
cttattgccgatttaaaggatgaagcagatgttataactgatttcccttatgctttagtg
aaaatggaaacattcccttacatggtgaataaagacttaaaacaaagagcagctctttca
gaagaaatgcgtgttttatatgttgcatttacacgagcaaagaaaaaactttatcttgtc
ggaaaaataaaagaaacagataaaaaatcaggacttgacctttatgataatgcaagttta
gaaggaaagattttagaagataaatttcgtaattcaagtcgcggttttcaacactggata
ttggcgcttcaaaatgccacaaaacttccgatgaaactcaatgtctacacaaaagaaggg
ttggaagcagaaaaaattgaatttacaagtcaacctgatttcaaaaaattggtcgaagaa
tcggaaaaatttgataatatcatggcctattctgatgaaatacaaaaagctcaaaaaatt
atgaattatgaatatccacatcaagcagcaacagagctttcaagtattcaaacaccaagt
caggttaaaaaacgaagctatgaaaaacaattacaagtgggtgaaattcaaccgaaaagt
gaatttactcgggtcaaaaagctagatttttctgattttggtcctaagaaagttactgct
gcagaaatcggttcggcaactcatagttttatgcagtatgcagatttttctcaagcagat
ttatttagttttcaagtgacacttgatgaaatgggatttgatgaaaaaataaaaaatcaa
attgatattgctaaaattttgactttgtttgatacagatttcggtcagtttttatcggaa
aatgttgataaaacagttaaagaagcaccattttcaatgttgagaacagatgaatttgct
aaagagcagtatattgttcggggaatttgtgatggatttgttaaacttactgataaaatc
gttctatttgattataagacggatagatttacaagttcttcagctatttctgaaataaaa
gagcgttatagagatcagatgaatctttatagtgaggctttgaaaaaagcctacgatgtc
aaccaagttgacaagtatctcattttattaggaggccctcagcaagtttttgttgaaaaa
ctagatgattag
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