Lactococcus lactis subsp. lactis CV56: CVCAS_0014
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Entry
CVCAS_0014 CDS
T01964
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
llt
Lactococcus lactis subsp. lactis CV56
Pathway
llt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
llt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CVCAS_0014 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llt03400
]
CVCAS_0014 (mfd)
Enzymes [BR:
llt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CVCAS_0014 (mfd)
DNA repair and recombination proteins [BR:
llt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CVCAS_0014 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_16
Cas3-like_C_2
AAA_7
UB2H
RecG_dom3_C
AAA_30
Sulfotransfer_4
Motif
Other DBs
NCBI-ProteinID:
ADZ62682
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All DBs
Position
17158..20643
Genome browser
AA seq
1161 aa
AA seq
DB search
MNIIEFFDQNWQLQKWQQGFSKRERTLLTGLSGTAKSLVMANAYENVADKYIIVTDSQFH
ANELYDELSTLLGEEKVFQFFSDDNIYAEFALASKDRVAYRLEALNFLLDEKSTGFLVIP
FLALRSYLPSPENFLENYLLLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGEFSMRGDIV
DIYPLDAENPVRLEFFGDEVDTIRSFDVESQRSLTSLERLEIYPASDFILTDKEFDKGAK
SLTEMTNLLTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYFYDKKTSLLNYFPKNVQIFI
DDFQKVNEMNNKLEMELADFILSEKAMERGFEGQTYLLDTMAKVRNYKPATFFSNFQKGL
GNLRFEQLYNFKQHSMQQFFGQLELFYTEVERFIKQEFTVVLAVSSEKLRKSLHELDLSL
QEVDRESIQVGKVNLIDLQLSNGFNFLDEKLVVMTEHEIFGKMRKKKARKLNITNAERLK
DYNELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQNGDTISVPVDHLDLLSKY
TAGEGKSPKINKLNDGRWRKTMSYVSKQVEDISDDLIKLYAERQAKKGFAFSPDDTSQEE
FDSGFSYVETEDQMRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAFKAINDGKQV
AVLVPTTVLAEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGRVDLIIGTHR
LLSKDVEFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTLHMSMLGIRD
LSVIETPPTNRYPVQTYVMETNYGVVRDAVLREISRGGQVYYVYNRVDTIEQKVSQLEEL
IPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNANTLFIENADMMG
LSQLYQLRGRVGRSNRVAYAYLMYRPEKILSEVSEKRLEAIKGFTELGSGFKIAMRDLSI
RGAGNLLGSEQSGFIDSVGFDLYSQLLEEAIHAKLGTSKQKRTSNVEIFLELDAFIPAYY
ISDERQKIEIYKRIRQIDSREIYEELQEELVDRFGEYPDEVAYLLEIGLLKHFADNALVE
KIEKSRFEATVTLEKVANTTYDPQDYFKALAKTSMKASVGEKYGKMTFRFKIENRNSVVL
LSEIMNFIEELSKIRDSYENK
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgaatattattgaattttttgaccaaaattggcaactacaaaaatggcaacaaggtttt
tcaaagcgtgagcgaactttactgacaggattgtcaggaacagcaaagagcttagtgatg
gcaaatgcttatgaaaatgttgctgacaaatatattattgttactgacagccagtttcat
gcgaatgaactttatgatgaactgtcaactttgcttggtgaagaaaaagtttttcaattt
ttttctgacgataacatctacgcagagttcgcacttgcatctaaagatcgagttgcttat
cgacttgaggcacttaatttcctacttgacgaaaagtcaacaggatttttggtcatacct
tttttggcattacggagctatttaccaagtcccgaaaattttttagaaaattatctttta
ctgacctctggggatgagtatgatttatcaaatttagttaatttattatcaaaagctggt
tatgaaaagacacagcgcgtgatgacgccaggtgaattttcaatgcgaggagatatcgtt
gatatttatcctttagatgcggaaaatccggtacgtttagagttttttggtgatgaagta
gatacgattcgctcatttgatgtggagagtcaacgttcactgacaagccttgaacgtttg
gaaatatatccggcaagtgattttattttgactgacaaagaatttgacaagggtgcaaaa
tcactgacagaaatgacaaatttactgacagacccgtcagcaaaatcatatatggaagaa
gtgatttcagcagctcaaaatcactactatcacaaagatttacgaaaatttgcggagtat
ttttatgataaaaaaacttcacttttaaattattttccaaaaaatgttcaaatattcatt
gatgattttcaaaaagtaaatgaaatgaataataagttagaaatggaattagcagatttc
attttatctgaaaaagcaatggaaagaggatttgaagggcagacttatttgctagataca
atggcaaaagttagaaattataagcctgctaccttcttttcaaatttccaaaaagggctc
ggaaatctcagatttgaacaactttataatttcaaacaacattcaatgcaacaatttttc
ggtcaattagaacttttttacactgaagttgaacgatttattaagcaagagtttacagtt
gttttagctgtatcatcagaaaaactccgtaaatcactccatgaattagatttaagttta
caagaggttgacagagaatctattcaagtgggtaaagtcaatctgattgatttgcaatta
tccaatggttttaatttcctcgatgaaaaattagtcgtcatgactgagcatgaaatattt
ggtaaaatgcgtaagaaaaaggcacgcaaactgaatattacaaatgcagaaaggctaaaa
gattacaatgaactcgctgttggtgattttgttgtccataagaatcatgggattgggaaa
tatttaggtttacaaacgcttgaagtcggcggaatgcatcgtgattatctgaccattcaa
tatcaaaatggggatacaatttctgttccagttgatcacctagatttactcagtaaatat
acagctggtgaaggaaaaagtcctaaaatcaataaactgaacgatgggcgttggcgtaaa
accatgtcttatgtcagtaaacaagttgaagatatttcagatgatttgattaaactttat
gctgaacgtcaggcgaaaaaaggatttgcattctcgccggatgacaccagtcaagaagaa
tttgattctggtttttcatatgttgaaactgaagaccagatgcgttcaatcaatgaaatt
aagcatgatatggaacttgaacggccaatggaccgcttgttagttggtgatgttggtttt
ggtaaaaccgaagttgcaatgcgagcagccttcaaagccataaatgacgggaaacaagtc
gcagttcttgtgccaacgactgttcttgctgagcagcattttaataattttactgaacgt
tttatcaactttggtgtaaatgtcgaagttctcagccgttttcaaacgaaaacacagcaa
actgaaattctagccaaattgaaaaaaggacgagttgatttaattattggaactcaccgt
ttactttcaaaagatgttgaattttttgatttaggtttgatgattattgatgaagaacaa
cgttttggggttaagcataaagaacgtttgaaagaattaaaaacccaggttgatgttttg
acattgacagccacacctattcctaggactctacatatgtcaatgcttggaattcgtgat
ttgtcagttattgaaacaccaccaacaaaccgttatccagttcaaacctatgtcatggaa
acaaactacggtgtggttcgtgatgcagtgttgagagaaatctctcgtggtggacaagtt
tactatgtttacaacagagttgacacgattgagcaaaaagtttctcaattagaagaatta
attcctgaagcaagaattggttttatacacggccaaatgactgaagtacaacttgaaaat
actttacttgcctttatcgcaggtgattatgatgtgcttgttgcaacgacaatcattgaa
actggggttgatattccaaatgcgaatacgctttttattgaaaatgcggatatgatgggc
ttgtcacaactttatcaattaagagggcgagtggggcgttcaaatcgggtggcttacgcc
tatttaatgtatcgacctgaaaaaatattgtctgaagtttcggaaaaacgtttggaagct
attaaaggctttacagaattaggctcaggtttcaagattgccatgcgtgatttgtctatc
cgtggtgctggtaatttactgggaagtgagcaatcaggatttattgattctgttggtttc
gatttgtactcacaactgttggaagaagccattcacgctaaacttgggacaagtaagcaa
aaacggacttcaaatgtggaaatttttttggaattggatgcctttattcctgcttattat
atttctgatgaacgtcaaaaaattgaaatttacaaacgaattcgtcaaattgatagtcgg
gagatttatgaagaactacaagaagaattggttgaccgttttggagaatatccagatgaa
gtcgcttatcttctggaaattggtctcttaaaacactttgcagataatgccttagttgaa
aaaattgaaaaatcgagatttgaagcaactgttactttggaaaaagtggctaataccacc
tatgacccacaagattatttcaaagccttggctaaaacaagcatgaaagcttctgtgggg
gaaaaatatggtaaaatgactttccgctttaaaattgaaaatcgaaactccgttgttctt
ttgagcgaaataatgaattttattgaagaattatcaaaaatacgagacagttacgaaaac
aagtaa
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