Lactococcus lactis subsp. lactis CV56: CVCAS_0336
Help
Entry
CVCAS_0336 CDS
T01964
Symbol
rheA
Name
(GenBank) DEAD/DEAH box family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
llt
Lactococcus lactis subsp. lactis CV56
Pathway
llt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVCAS_0336 (rheA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llt03019
]
CVCAS_0336 (rheA)
03009 Ribosome biogenesis [BR:
llt03009
]
CVCAS_0336 (rheA)
Enzymes [BR:
llt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CVCAS_0336 (rheA)
Messenger RNA biogenesis [BR:
llt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CVCAS_0336 (rheA)
Ribosome biogenesis [BR:
llt03009
]
Prokaryotic type
rRNA helicases
CVCAS_0336 (rheA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ADZ63001
LinkDB
All DBs
Position
340847..342490
Genome browser
AA seq
547 aa
AA seq
DB search
MKFSELGLSEGIVNTLTEIGYEQPTPIQEQTIKLALEGRDVLGQAQTGTGKTAAFGLPTI
EKIDASNPAIQALVIAPTRELAVQGQEELFRFGKSKGLKVRTVFGGSSIEKQIKGLKAGA
HIVVGTPGRLVDLIKRKAIKLDQLETLILDEADEMLNMGFLEDIHFIIEKTPEARQTLLF
SATMPNDIKKIGVKFMKNPEHIKIAAKEMTADRIDQYFVKTKEFEKFDVLTRLLDVERPE
LAIVFGRTKRRVDELIRGLKLRGYRAEGMHGDLDQNKRLAVLRDFKAGHIDVLVATDVAA
RGLDVSGVTHVYNYDITQDQESYVHRIGRTGRAGKSGRSVTFVSYNEMGYLRAIENMTKK
PMKGLKPPTKEEAYQASLSVAMDDVLRDLSDDSAKAKLAKFDKQAASLLEKFDAKELVAL
LLQGRVKDPDNQEEVKITAERPLPYNGEGKGFKKKGKGGGGRYKGRGNGDRDGNRGGYRG
NRDGKDGDRGGDRKRNWKDRDDNRGGYRGKRDDRRFDDRKQGEKTPRKRTTGTEKSAGFV
MRSRGDK
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttagtgaactcggcctgtcagaaggaatcgtaaatacacttacagagattggt
tatgaacaaccaacaccaatccaagaacaaacaattaaacttgcacttgaagggcgtgac
gttctaggtcaagcgcaaacaggaactggtaaaacagcagcatttggtcttccaacaatt
gaaaaaattgatgcttctaatccagctattcaagcactcgttattgctccaacccgcgaa
cttgcggttcaaggacaagaagaacttttccgttttggtaaatcaaaagggcttaaagtt
cgtactgtttttggtggttcaagtattgaaaaacaaattaaaggccttaaagctggtgca
catattgttgtgggaacaccaggacgtttggttgacttgattaaacgtaaagcaattaaa
ttggatcaacttgaaactttgattcttgatgaagctgatgaaatgttgaacatgggattc
ttggaagacattcatttcatcattgaaaaaacaccagaagctcgtcaaacattgcttttc
tcagcaacaatgccaaatgacatcaaaaaaattggtgtgaaattcatgaagaatcctgaa
cacatcaaaattgcagccaaagaaatgactgctgaccgtattgatcaatattttgtaaaa
acaaaagaatttgaaaaatttgatgttttgactcgtttgcttgatgttgaacgtccagaa
cttgcaattgtttttggtcgtacaaaacgtcgtgttgatgaattgattcgtggtcttaaa
ttgcgcggttaccgtgctgaaggaatgcacggagatttggaccaaaataaacgtttggct
gttttgcgtgatttcaaagcaggacatattgacgttttggttgcaactgacgttgctgct
cgtggactcgacgtgtcaggagttactcacgtttataactacgacattactcaagaccaa
gaaagctatgttcaccgtatcggtcgtaccggccgtgctggtaaatcaggacgttcagta
acatttgtttcatacaatgaaatgggttatcttcgtgccattgaaaatatgactaaaaag
ccaatgaaaggcttgaaaccacctacaaaagaagaagcttaccaagcgtcactctcagta
gctatggatgatgtccttcgtgatttgtctgatgattcagctaaagcaaaattggctaaa
tttgacaaacaagcagcgagcctacttgaaaaatttgatgctaaagaattggttgcttta
cttcttcaaggtcgcgtaaaagaccctgataatcaagaagaagttaagattacagctgaa
cgtccattgccatataatggtgaaggaaaaggcttcaagaaaaaaggtaaaggtggcggc
ggacgctacaaaggtcgtggaaatggcgaccgtgatggcaaccgtggcggttaccgtgga
aatcgtgatggtaaagatggcgaccgcggtggagatcgcaaacgcaactggaaagaccgt
gatgataaccgtggcggttaccgtggaaaacgtgatgaccgtcgttttgacgatcgtaaa
caaggagaaaaaactcctcgtaaacgtaccacaggaactgaaaaatcagctggcttcgta
atgcgtagccgtggtgacaaataa
DBGET
integrated database retrieval system
