Lactococcus lactis subsp. lactis CV56: CVCAS_0542
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Entry
CVCAS_0542 CDS
T01964
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
llt
Lactococcus lactis subsp. lactis CV56
Pathway
llt03410
Base excision repair
llt03430
Mismatch repair
llt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
llt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CVCAS_0542 (recJ)
03430 Mismatch repair
CVCAS_0542 (recJ)
03440 Homologous recombination
CVCAS_0542 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llt03400
]
CVCAS_0542 (recJ)
DNA repair and recombination proteins [BR:
llt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CVCAS_0542 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CVCAS_0542 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CVCAS_0542 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
ssDNA-exonuc_C
DHH
DHHA1
HTH_7
HTH_40
Motif
Other DBs
NCBI-ProteinID:
ADZ63204
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All DBs
Position
553498..555726
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AA seq
742 aa
AA seq
DB search
MIKAKYDWKVADTAISEDFLKIAKKHKLDELTSRVLYQRGIHAEAEIEQFLKPSLENLHD
PFLLHDMEKATGRILSAIEQGENILIYGDYDADGMTASSVMKSALDELGAEAQVYLPNRF
TDGYGPNLDVYQYYIKNENINLIITVDNGVAGLEAITWAQENGVDVIVTDHHSIPDQLPP
AYAIVHPEHPDSQYPFKYLAGVGVAFKVACALLEYAPSEMLDLVAIGTIADMVSLTDENR
ILVAHGLKVLAQTERAGLQELMKYAGVDFDKITEETVGFQIAPRLNALGRLDDPNPAIEL
LTGWDEDEAHEIAKMIDQKNSERKEIVEKIHNEALSMLTDEPVQILYHKDWHKGVLGIVA
GRLLEAIHKPVIMLAQEDGILRGSARSIENFDIFKALNAHRELFIAFGGHKQAAGMTLSL
ENVEAVKKAMIDYIVDNHLDMSKKSPLEIADRCHLDDISLSTITNLAKLAPFGMDNPKPR
FLIEDYKVIQSRSMGKDNAHLKLKIQEEKQQIDAVYFQHGSEELEFEQAQTKLVATLSSN
SWNGNTSLQLMIEDADSVGVELLDIRSKQIPIPKEANIFSQNQLKHGIMEDVLVIEETPG
DLAGLSVLKEAVSKAASDDFKMIYFKNKITDSYYLTGSGTREEFARLYKAIYQFPEFDIR
YKLKSLADYLKIPHLLLVKMIKIFEELEFVSIDNGLMTVNKTADKREISESTIYQELEKI
VKMQELFALAPVKEIYQNLLEK
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgataaaagcaaaatatgattggaaagtggctgatacagccatttccgaagattttcta
aagatagcgaaaaaacataaattagatgaattgacaagtcgcgtgctttatcaaagagga
attcatgcagaagctgaaattgagcaatttttaaagccaagtttagaaaatttacatgac
ccttttctacttcatgatatggaaaaagcaacagggcgtattttatcagcaattgagcaa
ggtgaaaacatcttaatttatggtgactatgatgctgacggaatgactgcatcatcagtc
atgaaatccgctctggatgaattaggagctgaggctcaagtttatttacccaatcgtttt
actgacggttacgggccaaatcttgacgtttatcagtactatattaagaatgaaaatatc
aatcttattattactgtagataatggggttgctggcttggaggcaattacctgggcacag
gaaaatggagtggatgtaattgttaccgaccatcactcaattcctgaccaacttccccct
gcttatgccattgtccaccccgaacatcctgacagtcaatatcctttcaaatatttggca
ggagttggtgtcgccttcaaagttgcctgtgctcttttagaatatgcacccagtgaaatg
cttgatttagttgcaattggtacaattgctgacatggtcagtttgactgatgaaaaccga
attttagtggctcatggtctaaaagttttggcccaaacagagcgtgccggcctacaagaa
ttaatgaagtatgccggggttgattttgataaaatcactgaggaaacggttggttttcaa
attgctccccgtttaaacgctttgggacgtctcgatgacccaaacccagccattgaattg
ctgacaggttgggatgaagatgaagcgcatgaaattgccaaaatgattgaccaaaaaaat
tcagagcgaaaagaaattgtggaaaaaattcacaatgaagctctgagtatgctgacagat
gaacctgttcagattttatatcataaggactggcataaaggtgtcttaggaattgttgcg
ggtcgcttgctagaagccatacataagccagtaatcatgctggcccaagaagatgggatt
ttgcgtgggtctgctcggtcaatcgaaaattttgatattttcaaggcattaaatgcccat
cgtgaactttttattgcttttggtggtcataaacaagccgcagggatgactttaagtctg
gaaaacgtagaagcagttaaaaaggcgatgattgattatatcgtggacaatcatttagat
atgtctaaaaaaagtcccttagaaattgctgaccgttgccacttagacgatatttcgctc
tcaacaatcactaatttagcaaaattggctccctttggcatggataatcctaagcctcga
tttttaatcgaagattataaggtgattcaaagccgaagtatggggaaagacaatgctcat
cttaaattaaaaattcaggaagaaaagcaacaaattgatgccgtttatttccaacatggt
tcagaagaattggaattcgaacaggcacaaacaaaattagtcgcaacactttcaagtaat
agttggaatggaaatacgagtcttcaattaatgattgaagatgctgattcagttggtgtc
gaacttcttgatataagaagtaaacaaattcctatcccaaaagaggctaatattttttct
caaaatcagctaaaacatggtataatggaagatgtgcttgtcatcgaagagacacctgga
gatttagcaggtttgtcagtattaaaagaagctgtcagtaaagcagcgtcggatgatttt
aaaatgatttattttaaaaataaaatcactgatagctattatttaacaggaagtggaaca
cgagaagaatttgcaagactttataaagcaatttatcaatttccagaatttgatattcgc
tataaattaaaatcacttgcggattatttgaaaatccctcatctcttgcttgtcaagatg
ataaaaatctttgaggaacttgaatttgtcagcattgacaatggcttaatgaccgttaat
aagacggccgataaacgcgaaatttctgagagtacaatttatcaagaactagaaaaaatt
gtaaaaatgcaagaactttttgctttagcacccgtcaaagaaatttatcaaaatttatta
gaaaaataa
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