Lactococcus lactis subsp. lactis CV56: CVCAS_1526
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Entry
CVCAS_1526 CDS
T01964
Symbol
yqgA
Name
(GenBank) mRNA degradation ribonuclease, metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
llt
Lactococcus lactis subsp. lactis CV56
Pathway
llt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CVCAS_1526 (yqgA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llt03019
]
CVCAS_1526 (yqgA)
Messenger RNA biogenesis [BR:
llt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CVCAS_1526 (yqgA)
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Lactamase_B_6
BHD_3
eIF-1a
Motif
Other DBs
NCBI-ProteinID:
ADZ64154
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Position
complement(1590240..1591952)
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AA seq
570 aa
AA seq
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MSNIKITPLGGVREFGKNMYLVEVEEQIFVLDAGLKYAEMDQLGVDFVIPDITYLLENAD
RVAGIFLTHGHADSIGALPYIVSELKVPVFGSELTIELAKINVKNYADSRKFNDFHVVTE
DTEIDFGKAVISFFSTTHTIPESLGIVISTNDGNIVYTGDFRFDPAVAKGYRTNMRRLAE
IGNSGVLALLSSSPNALSTMQSASEHEIYEKIYDYIDDNEGRVIIACNAGNLGRIQQTID
AAIKLGRRVAFTGEDMDQIIETATRLNKLQIVDKKSIIKPAEIKKYADNELVILETGRMG
EPLKSLGDMAHRRHKYVKIKDGDLVLAVTSPSVSYETTIARIENEIYKAGGVMKMLASDL
KISGHANARDLQFLLDIFRPKNLIPIQGEYRELSAHADLAMEMDILPEHIFIAKRGETVS
LENGDMIPSGVIQAENVMIDGSGVGDIGSVVLRDRKVLSEDGIFIAVITISKTERKIVSK
SRVHTRGFVYVKTSRDLMREAGELVNETVDKYLSGKEFDWAEIKGSIRDALGKFLYEQTK
RKPVILPVVMEARQPQDLNKRYTKKNHNKK
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatattaaaatcactccattaggtggtgtgcgtgaatttggtaagaacatgtat
ttagttgaggttgaagagcaaatttttgtgcttgatgcaggacttaaatatgctgaaatg
gatcaacttggtgttgactttgttattcctgatattacatatcttttagaaaatgcggat
cgtgtcgcaggaattttcttgactcacggacatgctgattcaattggtgctttgccttat
atcgtttctgaattaaaagttcctgtttttggttcagaattaacaatcgaacttgcaaaa
attaatgtcaaaaattatgctgacagtcgcaaattcaacgattttcatgttgtaactgaa
gatacagaaattgattttggtaaagccgtcatttcattcttctcaacaacacatacaatt
ccagaaagcttaggaattgtgatttctacaaatgacggaaacattgtttatacaggtgat
ttccgttttgatccagctgttgcaaaaggctatcgtaccaatatgcgccgattggctgaa
attgggaatagtggagtccttgctttactttcgtcatcaccaaacgctttgtcaacaatg
caatctgctagcgagcatgaaatttatgaaaaaatttatgactatattgatgacaacgaa
ggacgggtcattattgcttgtaacgcgggtaatttaggacgtattcaacaaacgattgat
gctgccattaaacttgggcgtcgtgttgcttttacaggcgaagatatggatcaaatcatc
gaaacagcaactcgtcttaacaaattacaaattgttgataaaaaatcaattattaaacca
gcagaaattaaaaaatatgctgataatgagttagttattttagaaacaggacgaatgggt
gaaccacttaaatctcttggagacatggctcatcgtcgtcataaatacgttaaaattaaa
gatggagatttagtacttgctgttacaagtccatctgtctcttatgaaacaacaattgct
cgtattgaaaatgaaatctataaagctggcggagtcatgaaaatgttggcttcagatttg
aaaatatctggtcacgcgaatgctcgtgatttgcaattcttacttgatatcttccgtcca
aaaaatttgattccaatccaaggggagtatcgtgaacttagtgcccatgctgatttagca
atggaaatggacattttaccagaacatatctttatcgctaaacgtggcgaaacagtcagt
ttggaaaatggagacatgatcccatctggtgttattcaagctgaaaatgttatgattgac
ggttcaggagttggagatatcggttcagttgttttacgtgaccgtaaagtgctatcagaa
gatggtattttcattgccgttatcacaatttctaagactgagcgtaaaatcgtcagcaaa
tctcgtgttcacactcgtggttttgtttatgttaaaacttcacgtgatctgatgcgtgaa
gctggtgagttggtcaacgaaactgttgataaatatctttctggaaaagaatttgattgg
gcagaaatcaaaggttctatccgtgatgctcttggaaaatttttatacgagcaaacaaaa
cgtaaaccagtgattcttccagtagttatggaagcacgtcaacctcaagatttaaataaa
cgttacactaaaaaaaatcataataaaaaataa
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