Lactococcus lactis subsp. lactis CV56: CVCAS_1733
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Entry
CVCAS_1733 CDS
T01964
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
llt
Lactococcus lactis subsp. lactis CV56
Pathway
llt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
llt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CVCAS_1733 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llt03021
]
CVCAS_1733 (rpoB)
03400 DNA repair and recombination proteins [BR:
llt03400
]
CVCAS_1733 (rpoB)
Enzymes [BR:
llt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CVCAS_1733 (rpoB)
Transcription machinery [BR:
llt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CVCAS_1733 (rpoB)
DNA repair and recombination proteins [BR:
llt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CVCAS_1733 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
ADZ64359
LinkDB
All DBs
Position
complement(1801188..1804778)
Genome browser
AA seq
1196 aa
AA seq
DB search
MAGHDVKYGKHRTRRSFSRIKEVIGLPNLIEVQTLSYKNFLDEGLANVFKEMFPIDNFAG
TMELEFVGYEMKTPKYTVEEARAHDANYSAPIYVTFRLVNKETGELKTQEVFFGDFPLMT
EMGTFINNGSERLIVSQLVRSPGSYFHLKADKNGLESFGHTTIPNRGAWFELDTDAKGIG
YVRIDRTRKLTFTTMLRALGFGSDEEILELLGETQLLTDTIAKDVHKNPADTRVEEALKD
IYDRLRPGEPKTADSSRGLLVARFFDPKRYDFAPVGRYKFNKKLALKNRLLGLTLAEPIV
DPETGEILVNTDTLVTRDVLDLIEPLLDNGLGNFVVEPSDDAVIPEPITLQSIKVYSPKD
PERVVTLLSNGNPDAECRVLTPADVISNISYWLGLAEGIGKVDDIDHLGNRRIRSVGELL
QNQVRIGLSRMERVIRERMSSSENENITPQGLINIRPVTASIKEFFGSSQLSQFMDQHNP
LSELSHKRRFSALGPGGISRDRASYEVRDVHYTHYGRMCPIETPEGPNIGLINNLSSYAK
VNEYGFIMSPYRRVDRVNGVVTDEVEYLTADEEDNYTVAQANSPLTEDSRFANETVMARH
TGNNIEVEASTADYMDVSPKQVIAVAAACIPFLENDDSNRALMGANMQRQAVPLIDPHAP
WIGTGMEHQTARDSGAALIAKHAGVVEYVDGNEIRVRRTSGELDIYNITKYRRSNSGTSY
NQRPLARLGEKVEKGDIIADGPSMVNGEMALGQNPLVAYMTWEGYNFEDAVIMSERLIKD
DVYTSIAIEEYESETRDTKLGPEEITREIPNVGDEALKNLDESGIIRIGAEVKDGDLLVG
KVTPKGETDPTPEERLLRAIFGEKAREVRDTSLRVPHGGGGIVHDVRVFTRENGDELPSG
VNKLVRVFIAQKRKIHVGDKMAGRHGNKGVVSNIVPMEDMPYLPDGTPIDIMLNPLGVPS
RMNIGQVMELHLGMAARTLGIHIATPVFDGASDEDIWDTVKEAGMADDAKTVLYDGRTGE
PFDNRISVGVMYMIKLHHMVDDKLHARSVGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAANVLQEILTYKSDDVIGRTRAYEAIVKGERIPKPGLPESFRVLVKELQSLGLDMKV
LDADRNVLDLRELDEDEVMTRPDNTEITPEMLEAQEAIVAQAEAEEEALINADTEK
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggacatgacgtaaaatacggtaaacaccgtacaagacgcagtttttcacgtatt
aaagaagtaatcggtttgccaaacctcatcgaagttcaaacattaagttataaaaacttc
ctcgatgaaggtcttgcaaatgtcttcaaagaaatgtttccaatcgacaactttgcgggt
acaatggaactcgaatttgttggttatgaaatgaaaaccccaaaatacactgttgaagaa
gctcgcgcacatgacgcaaactattcagcacctatctatgtaaccttccgtcttgtaaat
aaagaaactggtgaattaaaaacacaagaagtcttctttggtgacttcccactcatgact
gaaatggggacatttatcaataacggttcagaacgtttgatcgttagccaattggtacgt
agtcctggttcatacttccatcttaaagctgataaaaacggtcttgaaagttttggacat
acaaccattcctaaccgtggagcttggtttgagttagatacagatgctaaaggcattggt
tatgttcgtattgaccgtacacgtaaattaacttttacaactatgcttcgtgcgcttgga
tttggttcagatgaagaaatccttgaattgttgggcgaaactcaacttttaacagacact
attgcaaaagatgttcataaaaacccagctgacacgcgtgtagaagaagcgctcaaagac
atctatgaccgcttgcgtccaggagaacctaaaacagcagatagctcacgtggcttgctt
gttgctcgtttcttcgatccaaaacgttatgacttcgcacctgttggacgttacaaattt
aacaagaaattagcgcttaaaaatcgtttgcttggtttgactttggctgaaccaattgtt
gacccagaaactggtgaaattcttgttaatacagatactcttgttactcgtgatgtgctt
gatttaatcgaaccattgcttgataacggtcttggaaactttgttgttgaaccatctgac
gacgctgtaattccagaaccaattactttgcaaagtatcaaagtttattcacctaaagat
ccagaacgtgttgttacattgctctcaaatggtaatcctgatgcagaatgccgtgtcttg
acaccagccgatgtgatttcaaatatcagctactggcttggtcttgctgaaggaattggt
aaagtggacgatattgaccacttaggtaaccgtcgtatccgttcagtaggtgaattgctt
caaaaccaagtacgtatcggactttcacgtatggaacgtgttattcgcgaacgtatgtca
tcttcagaaaatgaaaacatcacaccgcaaggtttgattaacattcgtcctgtaacagct
tcaattaaagaattctttggttcatcacaattgtcacaatttatggaccaacacaatcct
ttatctgagctttcacacaaacgtcgtttttctgccttaggacctggtggtatctcacgt
gaccgtgcttcatatgaagtacgtgacgttcactatactcactatggccgtatgtgtcct
attgaaacacctgaaggaccaaacatcggtttgattaacaacttgtcatcatatgccaaa
gtaaacgaatatggtttcatcatgtcaccataccgtcgtgttgaccgtgtgaatggtgtg
gttactgacgaagttgaatatttaactgccgatgaagaagacaactatactgttgcccaa
gcaaactcaccattgactgaagatagccgctttgctaacgaaacagttatggctcgtcat
actggtaacaatattgaagttgaagcttcaacagcagactatatggacgtttcacctaaa
caggttatcgccgttgctgctgcatgtattccattcttggaaaacgatgactccaaccgt
gccctcatgggtgccaacatgcaacgtcaagcagttccattgattgacccacatgcacct
tggattggtactggtatggaacatcaaactgctcgtgactcaggtgctgcgcttattgca
aaacatgctggtgttgttgagtatgttgatggtaatgaaattcgtgttcgtcgtacttct
ggtgaactagatatttacaatattacaaaatatcgtcgttcaaactcaggaacttcttat
aaccaacgtccattggctcgacttggagaaaaagttgagaaaggggacatcattgctgat
ggaccttctatggtaaatggagaaatggcccttggtcaaaatccacttgttgcctatatg
acttgggaaggttataacttcgaggatgcggtaatcatgtcagaacgtttgattaaagac
gacgtttatacatcaattgccatcgaagaatatgaatcagaaacacgcgatacaaaactt
ggccctgaagaaattactcgtgaaattccaaacgttggggatgaagcactcaaaaacctt
gatgaatcaggaattatccgtattggtgctgaagttaaagatggcgacttgcttgttggt
aaagtaacccctaaaggtgaaactgatccaacaccagaagaacgtttgcttcgtgcaatc
tttggtgaaaaagctcgtgaagttcgtgatacatcacttcgtgttcctcacggaggtggc
ggtattgttcatgacgttcgtgtatttacacgcgaaaatggtgatgaattgccatcaggt
gtgaataaacttgttcgcgtcttcattgctcaaaaacgtaagattcacgttggggataaa
atggccggacgtcatggtaataaaggggttgtttcaaatatcgttccaatggaagatatg
ccttacttaccagatggtacacctattgatatcatgttgaacccacttggggtaccatca
cgtatgaatatcggacaagttatggagctccatttaggtatggctgctcgtacacttgga
attcacattgcaactccagtgtttgatggagcatctgatgaagatatctgggataccgtt
aaagaagctggaatggctgatgatgcgaaaacagtcctttatgacggacgtactggtgaa
ccatttgataaccgaatttcagtcggtgtcatgtacatgattaaacttcaccacatggtt
gatgataaactccatgctcgttcagttggtccttactcactcgttacacaacaaccgctc
ggtggtaaagcgcagttcggtggacaacgttttggggaaatggaagtttgggcacttgaa
gcctatggtgctgccaatgttcttcaagaaatcttgacttacaaatcagatgacgtgatt
ggacgtacgcgcgcttatgaagctattgttaaaggtgaacgtattcctaaaccaggtctt
cctgaatcattccgcgtattggttaaagagttacaatcacttggtcttgatatgaaagtc
cttgatgctgaccgtaatgttcttgacttacgtgaattggatgaagatgaagtaatgact
cgtccagataatacagaaattactcctgaaatgcttgaagcacaggaagctattgttgca
caagcagaagctgaagaagaagctttgattaacgctgatactgaaaaataa
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