Labilithrix luteola: AKJ09_01229
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Entry
AKJ09_01229 CDS
T04033
Name
(GenBank) Protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
llu
Labilithrix luteola
Brite
KEGG Orthology (KO) [BR:
llu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
llu03016
]
AKJ09_01229
Enzymes [BR:
llu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AKJ09_01229
Transfer RNA biogenesis [BR:
llu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AKJ09_01229
Prokaryotic type
tRNA splicing ligases
AKJ09_01229
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AKU94565
UniProt:
A0A0K1PM16
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All DBs
Position
complement(1230948..1232249)
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AA seq
433 aa
AA seq
DB search
MPMNRVGTERALGPVMETNTADTNVTLKAPAGHVTLETAGAPIKAWTQGVPFEAEAEAQL
RRVASLPFLHKWVAVMPDVHAGIGATVGSVIATKGAIIPAAVGVDIGCGMIATRTTLRAS
DLPDNLHGLRCAIEAAVPHGRTDNGGPGDRGAWHDLPEDVVSAWTELEPDYTALTDKFPK
LGRGTSVHHLGTLGTGNHFIEVCLDESEQVWFMLHSGSRGVGNRFGSFFIELAKRDMRTW
MVNLPDDNLAYLPEGTEHFGDYWRAVSWAQKFAAKNRELMMKAVVHAARKSLPAFELTDM
AVNCHHNYVAREFHYGANVLVTRKGAVRAAEGDLGIIPGSMGAKSFIVRGKGNRESFCSC
SHGAGRKMSRTAAKKVFTVQDHEEATRGIECRKDADVIDETPAAYKSIDDVMNAQRELVD
VVHTLRQVVCVKG
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
ttgcccatgaaccgcgttggcaccgagcgtgctctaggtccggtcatggaaacgaacacg
gcagacacgaacgtgacgctgaaggcgcccgccggccacgtgaccctggaaactgcgggc
gcgcccatcaaggcgtggacccagggcgtcccgttcgaagccgaggcggaggcccagctc
cgtcgtgtggcgtcgctcccgttcctccacaagtgggtggcggtgatgcccgacgtccac
gccgggatcggggcgacggtcggaagcgtgatcgcgacgaagggcgcgatcatcccggca
gctgtcggtgtcgacatcggttgcggaatgatcgcgacgcgcacgacgctccgcgcctcg
gacctgcccgacaatctccacgggcttcgctgcgcgatcgaagcggccgtcccgcacggc
cgtacggacaacggtggccctggcgaccgcggcgcgtggcacgaccttcccgaggacgtc
gtcagcgcatggacggagctcgagccggactacaccgcgctgacggacaagttcccgaag
ctcggtcgcggaacctccgtgcatcacctcggtacgctcggcacgggaaatcacttcatc
gaagtctgtttggacgagtccgagcaggtttggttcatgctccactccggctcgcgcggc
gtgggaaatcgatttggtagcttcttcatcgagctggcgaagcgcgatatgcgcacgtgg
atggtgaacctgccggacgataacctcgcctacctccccgaagggacggagcacttcggc
gattactggcgagcggtgagctgggcgcagaagttcgcggcgaagaaccgcgagctgatg
atgaaggccgtcgttcacgcggctcgaaagagcctcccggcgttcgagctgacggacatg
gcggtgaactgccaccacaactacgtggcgcgcgagttccactacggagcgaacgtgctc
gtgacccgcaagggcgcggtgcgcgcggcggagggtgacctcggcatcattcccggtagc
atgggagcgaagtcgttcatcgtgcgcgggaaggggaaccgtgaatcgttctgttcgtgc
agccacggtgcgggtcgaaagatgtcgcgcaccgcggcgaagaaggtcttcaccgtgcag
gaccacgaggaagcaacgaggggtatcgagtgccgaaaggacgcggacgtgatcgacgag
acgcctgcggcctacaagtcgatcgacgacgtgatgaatgcgcagcgtgagctcgtcgat
gtcgtccatacgctgcgtcaggtcgtgtgcgtgaaaggatga
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