Labilithrix luteola: AKJ09_02558
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Entry
AKJ09_02558 CDS
T04033
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
llu
Labilithrix luteola
Pathway
llu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
llu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AKJ09_02558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
llu03400
]
AKJ09_02558
Enzymes [BR:
llu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AKJ09_02558
DNA repair and recombination proteins [BR:
llu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AKJ09_02558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_30
DinI
AAA_22
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AKU95894
UniProt:
A0A0K1PRZ3
LinkDB
All DBs
Position
2546910..2550713
Genome browser
AA seq
1267 aa
AA seq
DB search
MPNELRASISERTGKSADALAQPAPELDPLPPVLPPEGVTISRLAEIAQLVNGKGRKRID
VAGVRGSADAALVATLAKGNGPPVVVVAEDLDAARRLAGDVRFLLGRPAPAEQALDGTDE
LASDDDVLLLATAESSPFADVNPDRRAAMSRMATLGHLAKDRPFRVLVVAATALARKLVP
RKVVAAHTRRVVFEDELDRDDLVRALTESGYIRVPVVEDPGSFAVRGSILDLWPPGAEGP
SRVELYGDLVVALKPFDATEQTTRGEGNVKELWLPPAREAILAKAHVDRARETIAGLADK
IDWPTTKTRALIEDVTTGRAFFGADAYLPAYYEGLASLDEYLPEGAPIVLASPPSITRAV
REELDRAKEDASAKSTGPYFGLDTLIRGEDEILADLAGRTVVTLHGAAVLGSEEGAVTTE
GEEDDRATTGLAAYEVTLSPLHLAASDHDDLTRAVKAARSGKGRTGTLGPVSRRIHHFRD
SGLRVFLTARAQTQAERLSQLLTHLGVRCRVRASRFDPAWLTETRSIDDEIDAQIVVGPL
GRGVTMPGEGFVVVTEEEIFGGRAHRAREKKARDNARPFIEDLRSLNVGDFIVHVEHGIG
RYLGLVHKDVGGLKVDLLVVEYAGGDKLYLPVYRLNQIQKFSGGEAAEPKIDRLGGSTFA
KTKARVKKEVRQMADELLRLYAERQAQPGIAIPAADDDYRAFEATFPFDETDDQARAIEE
VNKDLELARPMDRLVCGDVGFGKTEVAIRAAFRMAMSGRQVAVLCPTTVLAQQHFRTFES
RMGDYPITIKALSRFQSKKEQDDTLASLKEGKVDVVIGTHRLLSKDIHFKQLGLLVVDEE
QRFGVTHKERIKSLRTQVDVLTLSATPIPRTLQMAVSGIRDLSLITTPPVDRRAVRTFVT
RMDDLVLKEAIGRELSRGGQVFYVYNRIEGIYEKAQRVQQLFPDARIAVAHGQMAGAKTS
GASKEAGETALEKTMLDFVEGRHDVLVATAIVESGLDIPRANTIVIDRADLFGLSQLYQL
RGRVGRSKERAYCYLIVPPPNAMTDEARARIEALERHTELGSGFKIASLDLELRGAGDLL
GAEQSGSVASVGLDLFCSMLDEAVHELRGEPVIHDVDPELSFDVTALLPDDYVSDVGIRL
SLYKRLAGAIDEAQVGDIAVEMEDRFGAPPPEAKCLVRLMTLKCELRKMRVLGCEANAKS
VTLHLREDTPLDPKKILDLVKAPRSPYKITPDMRLTRRFEPTREQTGDGLANCETVLGEL
SRCWKDG
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgccgaacgagcttcgagccagcatttccgagcgaacgggcaagtcggccgatgcgctc
gctcagcctgcacctgagctcgatccgctcccgccggtcctgccgcccgagggtgtgacg
atttcgcgactcgccgaaatcgcgcagctcgtgaacggcaaagggcgcaagcgaatcgat
gttgcaggcgttcgcggaagcgccgacgcagccctcgtggcgacgctcgcgaagggcaac
gggcctccggtggtcgtcgtcgccgaggacctcgatgcagcgcgcaggctcgcgggcgac
gttcgcttcctgctcggtcggccggctcctgccgagcaagcgctcgacggaaccgacgag
ctcgcgtcggacgacgacgtgctcctgctcgccaccgccgagtcgtcccccttcgccgac
gtgaatcccgatcggcgcgcagcgatgagccgcatggccacgctcggccacctcgcgaag
gaccgccccttccgcgtgctcgtggtcgcggccacggctctcgcgcgcaagctcgtgccg
cgcaaggtggtggcggcacacacgcggcgtgtcgtgttcgaagacgaactcgatcgtgac
gacctcgttcgcgcgctcaccgagagcggctacatccgcgttccggtcgtcgaagatccc
ggctcgttcgccgtccgcgggtcgatcctcgacctgtggccaccgggagcggaaggtccc
tcgcgcgtcgagctctatggcgatctcgtggtggccctcaagcccttcgacgccaccgaa
cagaccacgcgtggcgaggggaacgtcaaagagctgtggctccctccggcacgcgaagcc
attctcgcgaaagcgcatgtcgatcgcgcgcgcgagacgatcgccggcctggccgacaag
atcgactggccgaccacgaagacgcgcgcgctcatcgaagacgtcacgacgggtcgcgcg
ttcttcggcgccgacgcgtatctgcccgcgtattacgagggcctcgcgtcactcgacgaa
tatctgcccgagggcgcgcccatcgtcctcgcctcgccgccgtcgattacccgcgccgtg
cgcgaagagctcgatcgggcgaaggaagacgcttcggcaaaatcgaccggcccctacttc
ggcctcgacacgctgattcgcggcgaagacgagatcctcgccgatctcgccggtcgcacc
gtggtcacgctccacggcgccgccgtgctcggcagtgaggaaggcgcggtcaccaccgaa
ggcgaagaagacgaccgcgcgaccaccgggctcgcagcctacgaggtcacgctatcgccg
cttcacctcgccgcctccgaccacgacgatctcacgcgcgccgtgaaagccgcgcgctcc
ggcaaaggacgcaccggcacactcggccccgtctcccggcgcattcaccacttccgcgac
agcggccttcgcgtctttctgacggcacgcgcgcagacgcaggccgaacgcctttcgcag
ctgctcacgcacctcggcgttcgctgccgcgtgcgagcctcgcgcttcgatcccgcgtgg
ctcacggagacgcgctcaatcgacgacgaaatcgacgcgcagatcgtcgtcgggcccctc
ggccgcggcgtcaccatgcccggcgagggcttcgtcgtcgtcaccgaagaagagatcttc
ggcgggcgcgctcaccgcgcccgtgaaaagaaggcgcgcgacaacgccagaccgttcatc
gaagacctccgcagcctcaacgtcggcgacttcatcgtccacgtcgagcacggcatcggg
cgctacctcgggctcgtccacaaagacgtgggcggcctcaaagtcgatttgctcgtcgtc
gaatatgccggcggcgacaagctttatctccccgtttatcgactgaatcagattcagaag
ttctcgggcggagaagccgctgagccgaagatcgaccgactcggcggatcgaccttcgcg
aagacgaaggcgcgggtgaagaaggaggtccggcagatggccgacgagctcctccgcctc
tacgccgagcgccaggcgcagccaggaatcgcgattcccgcggccgacgacgactaccgc
gccttcgaggccaccttcccgttcgacgagacggacgaccaggcgcgcgccatcgaggag
gtcaacaaggacctcgaattggctcgcccgatggaccgcctcgtctgcggcgacgttgga
ttcggcaaaacggaagttgccattcgcgcggcattccgaatggctatgagcggcaggcaa
gttgccgttctctgccccaccacggtcctcgcgcaacagcacttccgcaccttcgaatcg
cgcatgggcgactaccccatcacgatcaaggcgctgagccgcttccagagcaagaaggag
caagacgacacgctggcctcgctgaaagaaggcaaggtcgatgtcgtcatcggaacgcac
cgcctgctttcgaaggacatccacttcaagcagctcggtcttctcgtcgtcgacgaagag
cagcgcttcggcgtcacgcacaaggagcgcatcaagtctctgcgtacgcaggtcgacgtg
ctcacgctcagcgccacgcccattccgcgaacgctccagatggcggtgagcggcatccgc
gacctctcgctcatcaccacgccgcccgtcgatcgccgcgccgtccgcacgttcgtcacg
cgcatggacgacctcgtgctcaaagaagcgatcggccgtgagctctcgcgcggcgggcag
gtcttctacgtctacaaccgcatcgagggcatctatgagaaggcccagcgcgtccagcag
ctcttccccgacgcacgcatcgccgtggctcacggccagatggccggcgcgaagacctcc
ggggcgtcgaaagaggccggcgagacggcgctcgagaagacgatgctcgacttcgtggaa
ggccgccacgacgtgctcgtggccacggccatcgtcgaaagcggcctcgacattccgcgc
gcgaacaccatcgtcatcgatcgcgcggacctcttcggcctctcgcagctctaccagctc
cgtggccgcgtcggccgttcgaaggagcgcgcgtactgctacctgatcgtgcccccgccg
aacgccatgaccgacgaagcccgggctcgcatcgaagcactcgagcggcataccgagctc
ggaagcggcttcaagatcgcgagcctcgacctcgagctccgcggcgccggcgacctcctc
ggcgcagaacagtccggcagcgtggcaagcgtcggtctcgatctgttctgctccatgctc
gacgaagcggtgcacgagctccgtggagagccggtcatccacgacgtggaccccgagctg
tcgttcgacgtcaccgcgctcctgccggacgactacgtctccgacgtcggcattcgcctc
tcgctctacaagcgactcgccggcgccatcgacgaagcgcaggtcggcgacatcgcggtg
gagatggaagaccgcttcggagcgccgcccccggaggccaagtgcctcgtgcgcctcatg
acactgaagtgcgagctccgaaagatgcgcgtgctcggctgcgaggcgaatgccaagagc
gtcacgctccatctccgtgaggacactccgctcgatcccaagaagatcttggatctcgtg
aaggcacctcggagcccctacaagatcacaccggacatgcgcctcacgcgccgcttcgag
cccacacgggaacagacgggcgacgggctcgccaactgcgagacggtgctcggcgagctc
tctcgctgctggaaagacggctga
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integrated database retrieval system
