Labilithrix luteola: AKJ09_04202
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Entry
AKJ09_04202 CDS
T04033
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
llu
Labilithrix luteola
Pathway
llu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKJ09_04202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llu03019
]
AKJ09_04202
Messenger RNA biogenesis [BR:
llu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AKJ09_04202
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RMMBL
RNase_J_C
Anti-Pycsar_Apyc1
Radical_SAM
SHOCT
Motif
Other DBs
NCBI-ProteinID:
AKU97538
UniProt:
A0A0K1PVH9
LinkDB
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Position
complement(4313816..4315474)
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AA seq
552 aa
AA seq
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MRSVLRLLPLGGLGEVGMNCMALEQRGEVMLVDCGVTFDDRGLGVDVLHPDFSALDTFGA
RLTGVVITHGHEDHIGALPYLLRRHDIPIWAPPYAIGLIQQRLGEHEVLKHARIYETRPR
EPFSVGSFRVEPIRVTHSIADATALAIQTDEGVVVHSGDFKIDESPTDGEHFDEARLREL
GDAGVTLLMSDSTNVDAEGPTGSETDVGDVLEELVAGARSAVVVAMFASNVHRLRLLGDI
AKKHGRKLVLLGRGVGTHARVARTTGYLPWPDGLVVPDTMAREIPRSKVLAIATGSQGEA
RAALARLARGEHPMFEVGPGDRVILSARTIPGNEPEVHAILGMLLRRGCDVRSRLTDRGI
HVSGHAHRPEQRRMIELVRPKHFVPVHGTIHHLTRHGELARETNVPTKPNVAVVENGRVV
EVTRETIAFGGTEKTGRVAVYAGRELPPEILRERAFLAEEGVASCLVVVDDAGSVRDVRI
STRGVIDEEEYAEELADARANVRRAILELDASSSETTMAEHARLAIRRTFHKSRGFKPMT
VVHVYRSSGERA
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagcgtgcttcgccttctccctctcggcggcctcggcgaggtcgggatgaactgc
atggccctcgaacaacgaggggaggtcatgctcgtcgattgcggcgtcacgttcgacgat
cgtggcctcggcgtcgacgtccttcatcctgatttctcggcgctcgacacgttcggagcg
cgcctcaccggcgtggtcatcacgcacgggcacgaagaccacatcggcgcgctgccctac
ttgctccgtcgccacgacattcccatctgggcaccgccctacgcgatcggactcatccag
cagcgcctcggcgagcacgaggtcctcaagcatgcccgcatctacgagacgcggccgcgt
gagcctttcagcgtcggttcgttccgcgtcgagcccattcgtgtcacgcactccatcgcc
gacgccaccgcgctggccatccagaccgacgaaggcgtcgtcgttcactcgggcgacttc
aagatcgacgagagcccgaccgacggcgagcacttcgacgaggcacgcctgcgcgagctg
ggtgatgcgggtgtgacgctcctcatgagcgattcgaccaacgtcgatgccgaggggccg
accggcagcgaaaccgacgtgggcgacgtgctcgaggagctcgtggccggcgcgcgctcg
gccgtcgtggtggcgatgttcgcttcgaacgtgcatcgcctgcgcctccttggcgacatc
gccaagaagcacgggcgcaagctcgtgctgctgggtcgcggggtcggcacgcacgcgcgg
gtcgcgcgcacgacgggctaccttccctggccggacggtctcgtcgtgccggacacgatg
gcgcgcgagattcctcgctccaaggtcctcgccattgccaccggctcgcagggcgaagca
cgagcggccctcgcgcgactggcgcgtggcgagcacccgatgttcgaggtgggccccggt
gaccgcgtgatcttgtccgcgcggacgatccccggtaacgagcccgaggtgcacgcgatc
ctcggcatgctcctgcgccgtggttgcgacgtgcgctcgcgcctgaccgatcgcggcatc
cacgtgagcggccacgcccatcggcccgagcagcgacgcatgatcgagctcgttcggccg
aaacacttcgtgccggtgcacggcaccatccatcacctcacgcgtcacggcgagctcgcc
cgcgaaaccaacgtgccgacgaagcccaacgtcgcagtggtcgagaacggccgcgtggtc
gaggtcacgcgcgagacgatcgctttcgggggaaccgagaaaaccgggcgcgtggcggtg
tacgcgggccgggagctccccccggaaatcctgcgcgagcgcgccttcctggccgaagag
ggcgtcgcctcgtgcctcgtcgtggtcgacgacgcgggctcggtccgcgacgtgcggatc
tcgacacgcggcgtgatcgacgaggaggagtacgccgaggagctcgccgacgcgcgcgcc
aacgtacgccgagcgattctggagctcgatgcgtcgtcgagcgagacgacgatggcagag
cacgcacggctcgccatccggcgcacgttccacaagtcgcgaggcttcaaaccgatgacg
gtcgtgcacgtctatcgctcgagcggggagagagcatga
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