Labilithrix luteola: AKJ09_07403
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Entry
AKJ09_07403 CDS
T04033
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
llu
Labilithrix luteola
Pathway
llu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AKJ09_07403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llu03019
]
AKJ09_07403
Enzymes [BR:
llu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AKJ09_07403
Messenger RNA biogenesis [BR:
llu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AKJ09_07403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
SBP_bac_11
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AKV00740
UniProt:
A0A0K1Q5S9
LinkDB
All DBs
Position
7784808..7786256
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AA seq
482 aa
AA seq
DB search
MNSTATLPESPFAALGLLAPFVRAVAQEGYEAPTPIQSQAIPHVIQGRDLLGCAQTGTGK
TAAFVLPILQRLAERPRNGKIRCLILAPTRELAAQIGERASAYGRHVGLRQTVIYGGVGQ
RNQEIALKQKPDILIATPGRLLDLIQQGFVSLDGVEIFVLDEADRMLDMGFIHDVRKVVK
LVPTKRQTLFFSATMPRDIADLAQSILIDPVRVSVAPQSTTAEKVEQSVYFVAKSHKRAL
LEKLLRDQGALRTIVFTRTKHGANRLAEQLTRGGLDAAAIHGNKSQGARERALEGFKNGT
ISVLVATDLAARGIDVDGISHVVNFELPNVPEQYVHRIGRTGRAGAEGRAIAFCDEDEKK
LLQDIERLIRTRIPVAGRVVMPASSADRTGDNDGRPPRAHGAHGNGQAQRGSQQRAPQQQ
RASQQPRVAQQPRAPQQRPQAPRPASVTTGPSAGNDPNSSPGPRRRRRRRFRGARLPQGE
LS
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
gtgaattctactgcaaccttgcccgagtccccgtttgcggcgctcggactgctcgctcca
ttcgtccgcgcggtcgcccaagagggctacgaggcgccgacccccatccagtctcaagcc
attccgcacgtcatccaaggtcgcgatctgctcggttgtgcgcagaccggcaccgggaag
acggcggccttcgtcctgccgatcctccagcgcctcgcggagcgcccgcgtaacggcaag
atccgctgtctgatcctcgccccgacgcgtgagctcgcggcccagatcggcgagcgcgcg
tccgcgtatggccgtcatgtcggcctgcgacagacggtcatttacggcggtgtcggccag
cgcaatcaggagatcgcgctcaaacaaaagcccgacatcctgatcgccacgccgggccgc
cttctcgatctcatccagcaagggttcgtttccctcgatggtgtcgagatcttcgtcctc
gacgaagccgaccgcatgctcgacatgggcttcatccacgacgtccggaaggtcgtgaag
ctcgttccgacgaagcggcagacgctcttcttctcggcgaccatgcctcgcgacatcgcc
gacctcgcgcagagcatcctcatcgaccctgtccgcgtgtcggtcgcgccgcagtcgacg
acggcggagaaggtcgagcaatccgtgtacttcgtggcgaagagccacaagcgcgccttg
ctcgaaaagctgctccgcgatcaaggagcgctccgtacgatcgtcttcacgcgcaccaag
cacggcgcaaaccgcctcgccgagcaactcacccggggcggtctcgacgccgccgcgatc
cacgggaacaaatcccaaggggcacgtgagcgcgccctcgaaggattcaagaacggaacc
atctccgttctggtcgccaccgacctcgcggcgcgcggcatcgatgtcgacggcatctcg
cacgtggtgaatttcgagctgccgaacgtccccgagcagtacgtccaccgtatcggtcga
accggccgcgcgggcgccgagggccgagcgatcgccttctgcgacgaggacgagaagaag
ctccttcaagacatcgagcgcctcatccgtacgcgcatccccgttgcagggcgagtggtc
atgcccgcgtccagtgccgaccgaaccggcgacaacgacggccgaccgccgcgcgcgcac
ggggcgcatgggaatggtcaggcgcagcgcggttcgcagcaacgtgctccgcagcagcag
cgcgcttcccagcagccgcgcgtggcgcagcagccgcgcgctccgcagcagcgccctcag
gcgccgcgtcccgcgagtgtcaccaccggacctagcgccggtaacgatccgaactcttcg
cccgggccgcgccgacgtcgtcgacgccggttccggggtgctcgcctcccccagggcgaa
ctttcttga
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