Labilithrix luteola: AKJ09_11247
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Entry
AKJ09_11247 CDS
T04033
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
llu
Labilithrix luteola
Brite
KEGG Orthology (KO) [BR:
llu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llu03019
]
AKJ09_11247
Enzymes [BR:
llu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AKJ09_11247
Messenger RNA biogenesis [BR:
llu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AKJ09_11247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
AAA_30
T2SSE
nSTAND3
AAA_25
SRP54
NAD_binding_10
ResIII
NACHT
Zeta_toxin
FtsK_SpoIIIE
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AKV04584
UniProt:
A0A0K1QFP0
LinkDB
All DBs
Position
complement(11869522..11873223)
Genome browser
AA seq
1233 aa
AA seq
DB search
MPEIEFPPELPISARVHDIATAVNDHQVVIVAGATGSGKTTQLPKIALAMGRGLERIIGV
TQPRRIAATSVAARVATELGTPLGTDVGYQVRFDDRTSPQTYVKFMTDGILLAEIQGDRL
LKRYDTIIIDEAHERTLTIDFLLGWIKRILPERPDLKVIVSSATLETERFSEFFGGAPVI
QVEGRTFPVEVLYEPPNEDADLPEAVANAVENVTSLDPRGDILVFLPGEREIREAEAELL
TRNLRHTVVQPLYARLSAGDQAKVFQSIPQRRVILATNVAETSVTIPGIVYVVDTGIARL
SRYDPRSGTTRLQIEGVSRASADQRKGRCGRVREGICVRLYDEQSFAARPAFTDPEIKRS
GLAGVILRMKSLGLGDVESFPFLDPPHSRSITEGYRVLEELGALDKNRDLTAIGHRLARF
PVDPRIGRMILAGAEVGSLRDILVVASALNIQDPRERPREAQQKADDLHRQFRDERSDFV
GLLRLWDFVKEAERRGKGQLRRTCKENFLSYLRIREWGEVHRQLEEIVRELNIDSKGGGR
KGQPEKRTSEDADALHRALVTGLLSKVGKWNPENRVYMGAKQTRFAIHPSSALARKPPAW
IMAFELVETTQLFARVAAKIEPEWLLDAGVHLLKKSYGDPHWSEKSARASIREHSTLFGL
SIARDVSVDYASVAPVEARKMFLDHALVRGEFTTKGAFQRKNLEILERVAKLRAKARRSD
MLADDDALLAFFDQRVGADVVNGKAFEAWREKAERENPNVLLLSMEDVLTGERSLSPKDY
PDTIVLHGTTVPVTYRFEPQAEDDGITLTVPLLLLPQLEAGELDWTISGWHRDKLAALLY
ELPRALRRDVGDVPSVVDLVAPRLKPFVGPMIPALSRAVSEVTGADVPEDAFRPDVVASY
LRLTCRVVDEDGKVVAQSKDVDDLFKRFGARARAAFKETAPQAAWGRTGVTAWDFGDLPA
FVTTRAGRIDVRSYPALVDRGTSVDLALLESTAAAEAATRAGVRRLVALAARKNISAFAP
RLPAAFSRPNGALPSRVESEAFRGMVLGRIVDLAFALGSDAELPRSKRVFDDLLTKGLPR
IDAAFRVVTDAMKPITAELDKTLAALKNASRHPSGRAAIVDIYAQLEGLFPIDLMEWVPI
PRLEHYPRYLRAAQARLQRAVSDPRKDADKLAPFTPLWNTFLTKAKSARDPASASELRWT
FEELRVAIFAPELKTPVPVSVPKVAAALTALRA
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgccggagatcgagttcccgcccgagttgccgatttcggcacgcgtgcacgacatcgcg
accgcggtgaacgaccaccaggtcgtcatcgtcgccggtgcgacggggtcgggaaagacc
acccagcttcccaagatcgccctcgccatgggccgcggcctcgaacgcatcatcggcgtt
acccagccgcgccgcatcgcggccaccagcgttgctgcgcgcgtggcaaccgagctcgga
actcccctcggtacggacgtcggctaccaggttcgtttcgacgaccggacgtcgccgcag
acgtacgtgaagttcatgacggacgggattctcctcgcggaaatccaaggcgatcgtctc
cttaagcgctacgacacgatcatcatcgacgaggcgcacgagcgcacgctcaccatcgac
ttcctcctcggttggatcaaacgaatcctgcccgagcgtccggatctcaaggtcatcgtc
agctcggccacgctcgagacggagcgcttctccgagttcttcggcggcgcgcccgtcatc
caagtcgaagggcgcacctttccggtcgaggttctctacgagccgccgaatgaagacgct
gatcttcccgaggccgtggccaacgccgtcgagaacgtcacctcgctcgacccccgtggg
gacatcctcgtgttcctccccggtgagcgcgagatccgcgaggccgaagcggagctcctg
acccgaaatctccgacacacggtggtccagccgctctacgcacgcctctcggcgggcgac
caggccaaggtcttccagagcattccgcagcgccgcgtgattctcgccaccaacgtggcc
gagacgtccgtgacgattcccggcatcgtttacgtggtcgacacgggcatcgcccgcctt
tcgcgctacgacccacgctccggcaccacacgcctgcagatcgaaggtgtctcgcgtgcc
agcgccgatcagcgcaaagggcgttgcgggcgcgttcgcgagggtatttgcgttcgcctc
tacgacgagcagagcttcgctgcccgtccggccttcaccgatccggagatcaagcgttcg
ggcctcgcgggtgtcatcctccggatgaagtcgctcggcctcggcgacgtggagagcttt
cctttcctcgatccgccgcactcgcgatctatcaccgagggctatcgcgttctcgaggag
ctcggcgcgctcgacaagaatcgcgacctcacggccatcggtcatcgtctggcgcgcttc
ccggtcgacccgcgcatcggaagaatgatcctcgccggtgccgaggtggggagcctgcgc
gacatcctcgtcgtcgcctccgcgctcaacatccaggatccgcgcgagcgtccccgcgag
gcgcagcaaaaggccgacgaccttcatcgccaattccgcgacgagcgttccgacttcgtc
gggctcctgcgtttgtgggatttcgtcaaagaggccgagcgacgcggaaaggggcaattg
cgccggacatgcaaggagaacttcctctcctatcttcgaatccgcgaatggggtgaagtt
caccgtcagctcgaagagattgtccgcgagctgaacatcgattcgaagggcggtggtcgc
aaaggccagcccgaaaagcggacgtcggaagacgcggatgccctgcatcgagcactggtg
accggccttctttccaaagtcggaaagtggaatccagagaatcgcgtctacatgggggcc
aagcaaacgcgctttgccatccatccgtcgtcggcactcgcccgcaagccgccggcctgg
atcatggcgttcgagctggtcgaaaccacgcagctcttcgcgcgcgtggccgccaaaatc
gagccggaatggctcctcgacgcaggcgtgcatctgctcaagaagtcgtatggcgacccg
cactggtcggagaagtccgcgcgcgcttcgattcgcgagcattcgacactcttcggcctc
tccatcgcgcgcgacgtgagcgtcgactacgcgagcgtcgcgcccgtggaagctcggaag
atgttcctcgatcacgcgctcgttcgtggggaattcaccacgaaaggggcctttcagcgc
aagaatctggagattctcgagcgcgttgccaagctccgcgccaaggcacgccgtagcgac
atgctggccgacgacgatgcgctcctcgcgttcttcgatcagcgcgtgggcgccgacgtc
gtgaacggcaaagcgttcgaggcctggcgggagaaggcggagcgtgagaatccgaacgtg
cttctcctctcgatggaagacgttctcaccggcgaacgcagtctctcgccgaaggactac
ccggacaccatcgttctgcacggcaccacggtgcccgtgacgtatcgcttcgagccgcag
gccgaagacgacggaatcacgctcacggtgcctctgttgctcctccctcagctcgaggcg
ggcgagctcgattggacgatttccggctggcatcgcgacaagctggcggcgctgctctac
gagcttccgcgtgccctccggcgcgacgtgggcgacgttccttcggtcgtcgatctcgtg
gctcctcgcctgaaaccgttcgtcggaccgatgattcccgcgctctcgcgcgcggtctcc
gaggtgaccggcgccgacgttccggaagatgcgttccggcccgatgtggttgcatcgtat
ctgcgcctcacctgccgcgtcgtcgacgaagacggcaaagtcgttgcgcagagcaaggac
gtcgacgacctcttcaagcggttcggagcccgggcgcgcgccgcgttcaaggagacggcg
ccgcaagccgcgtggggtcgaacgggcgtcacggcgtgggacttcggcgatctccccgcc
ttcgtcaccacccgcgcaggtcgtatcgacgttcgtagctacccggcgctcgtcgatcga
ggcacgtccgtcgatctggcgctcctcgagtcgactgcggcggccgaagctgcaacgcgg
gcaggggtgcgtcgtctcgtggcgcttgccgcgcgcaagaacatctcggcgttcgcgccc
cgccttccggcggcgttttcacgtcctaacggtgcgctcccgtctcgcgtggagtccgag
gcgttccgcggcatggtgctcggtcgaatcgtcgatctcgcgttcgcgctcggcagcgac
gccgagctgcctcggtcgaagcgtgtcttcgatgatctgctcacgaagggcttgcctcgc
atcgatgccgccttccgcgtcgtaaccgatgcgatgaagcccatcaccgccgagctcgac
aaaacgctggccgcgctcaagaacgcctcgcgccatccgagtggacgcgcggcgatcgtc
gacatctacgcgcagctcgaggggctcttcccgatcgacttgatggagtgggttccgatc
ccgagactcgaacactatccgcgctacctccgcgcggcgcaggcgaggctccagcgcgcc
gtgagcgatccgcgcaaagacgccgacaagctcgcgcccttcacgccgctctggaacacg
ttcctgaccaaggcgaagagcgcgcgcgacccggccagtgcgagcgagctccgctggacg
ttcgaagagctgcgcgtcgccatcttcgccccggagctgaagaccccggtccccgtctcc
gttccgaaagtcgctgccgccctcacggccctccgcgcctga
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