Lutra lutra (Eurasian river otter): 125078197
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Entry
125078197 CDS
T08100
Name
(RefSeq) general transcription factor IIH subunit 1 isoform X1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03022
Basal transcription factors
llv03420
Nucleotide excision repair
llv05203
Viral carcinogenesis
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125078197
09124 Replication and repair
03420 Nucleotide excision repair
125078197
09160 Human Diseases
09161 Cancer: overview
05203 Viral carcinogenesis
125078197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125078197
03400 DNA repair and recombination proteins [BR:
llv03400
]
125078197
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125078197
DNA repair and recombination proteins [BR:
llv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125078197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
GeBP-like_C
Motif
Other DBs
NCBI-GeneID:
125078197
NCBI-ProteinID:
XP_047546357
LinkDB
All DBs
Position
10:72852801..72892262
Genome browser
AA seq
547 aa
AA seq
DB search
MATSSEEVLLIVKKVRQKKQDGALYLMAERIAWAPEGKDRFTISHMYADIKCQKISPEGK
AKIQLQLVLHAGDTTNFHFSNESTAVKERDAVKDLLQQLLPKFKRKANKELEEKNRMLQE
DPVLFQLYKDLVVSQVISAEEFWANRLNVNATESSTSNHKQDVGISAAFLADVRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKMKYAENVPHNMTEKEFWTRFFQSHYFHRDRLNTGSKD
LFAECAKIDEKGLKTMVSLGVKNPLLDLTALEDKSLDEGYGISSMPSTSNSKSIKENSNA
AIIKRFNHHSAMVLAAGLRKQEAQNEQNGEPSSIDGNSGDADCFQPAVKRAKLQESIEYE
DLGKNNSIKTIALNLKKSDRYYHGPTPIQSLQYATSQDIINSFQSIRQEMEAYTPKLTQV
LSSSAASSTITTLSPGGALMQGGTQQAINQMVPNDIQSELKHLYVAVGELLRHFWSCFPV
NTPFLEEKVVKMKSNLERFQVTKLCPFQEKIRRQYLSTNLVSHIEEMLQTAYNKLHKWQS
RRLMKKT
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atggcaacttcatctgaagaagttttgctgattgtgaagaaggtgcgtcagaagaagcag
gatggagctttatacctcatggcagaaagaatcgcttgggcacctgaaggcaaagataga
tttacaatcagccatatgtatgcagatattaaatgccagaaaatcagtccagaaggaaaa
gctaaaattcagcttcagctggtgttgcatgcaggggacacaactaacttccatttttcc
aatgaaagcacagccgtcaaagagcgagatgcagtaaaagaccttcttcagcagctgctg
cccaaattcaagaggaaagcaaataaagagctggaagagaagaacagaatgctgcaagaa
gatcctgttttgtttcagctttataaagaccttgttgtgagtcaagtgatcagtgctgag
gaattctgggccaatcgtttaaatgtgaatgcaacagagagttctacatccaatcataag
caagatgttggcatttctgcagcatttctggctgatgtccggccccaaacggatggatgc
aatggtctgagatacaatttaacttctgatatcattgagtccatatttaggacctatcca
gcagtaaaaatgaaatatgccgaaaatgttccccacaacatgacagaaaaggaattttgg
acacgtttctttcagtcccactattttcacagggaccggctgaatacagggtcaaaggac
ctctttgcagaatgtgccaaaatagatgaaaaagggttaaaaacaatggtttcattagga
gtaaaaaacccattacttgatttgacagctttggaagataaatcattagatgagggctat
ggcatttcttccatgccatctacttctaattctaagtccataaaggagaatagtaatgct
gccatcatcaagaggtttaaccatcacagtgccatggtcctggcagcaggtctcaggaaa
caagaagcacaaaatgaacaaaatggtgagcccagcagcatcgatggaaattctggagat
gcagattgcttccagccagcagtcaaaagggcaaagttacaagagtctattgaatatgaa
gacttggggaaaaataattccataaaaacgattgcactaaacctcaagaagtcagatagg
tattatcatggtccaactccaatccagtcactacagtatgcaacaagtcaggacattatt
aattcttttcaaagtattaggcaagaaatggaagcttatacacccaaattaactcaggtt
ctctcaagtagcgctgccagtagtacgatcacaacgctgtcacccggaggagcacttatg
cagggagggacccagcaagccataaaccagatggtgccaaatgatattcagtctgaattg
aaacacctttatgtggctgttggggaacttctacggcacttctggtcctgcttccctgtt
aatacaccattcctagaagaaaaggtagtaaaaatgaaaagtaatttggaacgatttcaa
gttacgaagctctgcccattccaagaaaaaattcggagacagtatttaagcacaaatttg
gtaagtcacatagaagagatgctgcagaccgcctacaacaagctccacaagtggcagtca
cggcgtctcatgaagaaaacgtga
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