Lutra lutra (Eurasian river otter): 125078397
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Entry
125078397 CDS
T08100
Name
(RefSeq) DNA-binding protein SMUBP-2-like isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
llv
Lutra lutra (Eurasian river otter)
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
llv03009
]
125078397
03012 Translation factors [BR:
llv03012
]
125078397
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125078397
5.6.2.5 RNA 5'-3' helicase
125078397
Ribosome biogenesis [BR:
llv03009
]
Eukaryotic type
Other ribosome biogenesis factors
125078397
Translation factors [BR:
llv03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
125078397
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_30
AAA_19
zf-AN1
Viral_helicase1
DEAD
nSTAND3
ResIII
AAA_22
SLFN-g3_helicase
IstB_IS21
AAA_16
Helicase_RecD
UvrD-helicase
Flavi_DEAD
AAA_25
DnaB_C
AAA
PhoH
PIF1
ABC_tran
Zot
AAA_18
UvrD_C_2
NPHP3_N
NTPase_1
DAP3
Motif
Other DBs
NCBI-GeneID:
125078397
NCBI-ProteinID:
XP_047546973
LinkDB
All DBs
Position
10:110353209..110378218
Genome browser
AA seq
1028 aa
AA seq
DB search
MASAAVESFVTKQLDLLELERDAEVEERRSWQENVSQKELQSRGVCLLKLQVSSQRTGLY
GRLLVTLEPRRCVAAAVLPSNSFTSGDIVGLYDEGSQLATGILTRITQRSVTVAFDESHD
FRLSLDREQTYRLLKLANDVTYKRLKKALITLKKYHSGPACSLIDVLFGGSVPSPASEIQ
PLPFCNPCLDASQKEAVSFALSQKELAIIHGPPGTGKTTTVVEIILQAVRQGLKVLCCAP
SNVAVDNLVERLAHSKQRIVRLGHPARLLDSIQQHSLDAVLARSDSAQIVADIRKDIDQA
FVRASSLPPLCAKNRQTQEKREKSGVWSEIKLLRKELKEREEAAMLESLRSAAVVLATNT
GASSDGPLRLLPDGHFDVVVIDECAQALEASCWIPLLKARRCVLAGDHKQLPPTTISHKA
ALAGLSRSLMERLADEIGAQVVRTLTVQYRMHQAIMRWASDALYSGQLTAHPAVAGHLLR
DLPGVAATEETSVPLLLVDTAGCGLFELEEEDDQSKGNPGEVRLASLHIQALVDAGVQAS
DIAVITPYNLQVDLLRQSLAHRYPELEIKSVDGFQGREKEAVVLSFVRSNRKGDVGFLAE
DRRINVAVTRARRHVAVVCDSHTVSNHTFLKTLLGHFMEHGEVRTAFEYLDDIVPENYCH
ESSQGHSQAGAKPHGSAVSARKPPGGRPRDRTRETRAAAGLERKRTGGRRSGPEVPSQPS
LNGGSPEGAATRDRAEHFRAKIAEFVASEKTQLEFPASLNSHDRMWVHQIAEEHGLRHDS
SGEGKKRFITVSKRAWPAPPAPPAPPPPAGASSHTPAGPTAPGPTQTEPPAGGQSSQDTL
NLKALHLERLQRAKSKQERPATDGASTDGATKDRAARDGATMDGQQASRSGLRTFPEKKK
KKETKGNTAMDLPGKEDFEALVAAAIKADNTCGLAKCTASVATLGQLCLHCGRRFCLSHH
LPEIHGCGERARAHARQRISREGVLYAGSGTKDRSLDPAKRAQLQRRLDKKLDELSGQRK
SKRKEKEK
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggcggctgtggagagcttcgtgaccaagcagttggacctgctggagctcgag
agagacgcggaggtcgaggagcgcaggtcttggcaggaaaacgtctcccagaaagaactc
cagagccgaggcgtgtgtttgctgaagctgcaggtgtccagccagcggaccgggctctac
gggcggctgctggtcaccttggagcccaggagatgtgtggcggccgccgtgcttcccagc
aacagctttacgtcaggcgatatagtgggtctgtacgacgaagggagtcagctggccacg
gggatcctgacccggatcacgcagagatcggtcacggtggcctttgacgagtcccatgac
ttccggctgagcttggacagggagcagacctacagactgttaaaactggccaatgatgtc
acttacaagcgactgaaaaaggctctgatcacactaaagaagtaccactctggccccgcg
tgctcactcatagacgttctctttggcggctccgtccccagtcctgccagtgagatccag
ccgctgccgttctgtaacccttgcctggatgcctcccagaaggaagccgtctccttcgcg
ctgtcccagaaggagcttgccatcatccatgggcctcctggcaccgggaagaccactacc
gtggtcgagatcattcttcaggctgtgaggcaaggcttaaaggttctgtgctgtgctccc
tccaacgtcgccgtggacaacctggtggagcgtctggcccacagcaagcagaggatcgtg
cgccttgggcaccctgcccgcctgctggactccattcagcagcattccctcgacgcggtg
ttagcgcggagcgacagcgcccagattgtcgcggacatcaggaaggacatcgatcaggcc
ttcgtacgtgcctcctccctgccaccgctctgcgcgaagaacaggcagacccaggagaag
agagagaagagcggcgtttggagtgaaatcaagctgttgaggaaggagctgaaggagagg
gaggaggccgcgatgctggagagcctcaggtcggcggcggtggtgctggcgacaaacaca
ggtgcctcttccgacggccctctgaggctgctgcccgacggccacttcgacgtggtggtc
atcgacgagtgtgcgcaggccctggaagccagctgctggatcccactgctgaaggccagg
aggtgcgtcctggccggcgatcacaagcagctgccccccaccaccatctctcacaaggcc
gcactggcggggctgtcgcggagcctgatggagcggctggcggacgagatcggcgcacag
gtggtgcggacgctcacggtgcagtaccgcatgcaccaagccatcatgcgctgggcctcg
gacgccctctacagcgggcagctcaccgcccaccctgccgtggcggggcacctcctgcgg
gacctcccaggggtggctgccacggaggagacgagcgtcccgctgctgctcgtggacaca
gccggctgcgggctctttgagctggaagaggaggacgaccagtctaaggggaaccccggg
gaagtacgcctcgccagtctgcacatccaggccctggtggacgctggtgtccaagcgagt
gacatcgccgtcatcacgccgtacaacctccaggtggacctgctcaggcagagccttgcc
cataggtaccccgagcttgaaattaagtctgtcgatggcttccaaggccgagagaaggag
gctgtggtcctgtccttcgtcagatccaataggaaaggcgacgtgggcttcctcgctgag
gaccggcggatcaacgttgcggtcacccgcgctcggcgccacgtggcggtcgtgtgcgat
tctcacaccgtcagcaaccacaccttcctgaagaccctgctggggcacttcatggagcac
ggggaggtgcgcacggcctttgagtatcttgacgacattgtccctgaaaactactgccac
gagagttcccagggccacagccaagctggggcaaagccccacggctccgcggtgtcagcc
aggaagcctcctggaggccggccgcgggacaggacccgggagaccagagcagccgcaggg
ctggagcggaagaggacgggtgggagacgctcgggccctgaggtcccttctcagcccagc
ctcaatggaggcagcccagagggagcggcaaccagagaccgtgcagagcatttccgggcc
aagatcgccgagtttgtggcgagcgagaaaactcagctggagtttcctgcttccctgaac
tcccacgacaggatgtgggtccaccaaatagctgaagagcatggcctgagacacgatagc
tccggggaagggaagaagaggttcatcaccgtgagcaagagagcctggccggccccgcca
gccccgccagccccgccgcctccagcaggggccagcagccacacccctgcgggtcctacg
gcccccggccccacccagactgagccccctgctgggggacagagcagccaggacaccctg
aatctgaaggccctgcacctggaaaggctgcagagagcgaagagcaaacaggagcggccc
gccacggacggggcctccacggatggggccaccaaggacagggccgccagggacggggcc
accatggatgggcagcaggcctcgcgctctgggctgcgcacgttcccagagaagaagaag
aagaaagaaacaaaaggaaacacggccatggatttgcccggcaaggaggacttcgaggcc
ctggtcgcggctgccatcaaggctgacaacacctgtggcctcgctaagtgcacagccagc
gtggcaaccctgggccagctctgtctgcactgcggccgccggttctgcctcagccaccac
ctgcccgagatccatggctgtggggagagggctcgtgcccatgcccggcagaggatcagc
cgggagggagtcctctatgccggcagtggaaccaaggacaggtccctggaccccgccaag
agggcccagctgcagaggaggctggacaagaagctggatgaactgagcggccagaggaag
agtaaacggaaggagaaggaaaagtaa
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