Lutra lutra (Eurasian river otter): 125080396
Help
Entry
125080396 CDS
T08100
Name
(RefSeq) CCR4-NOT transcription complex subunit 4 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125080396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
llv03000
]
125080396
03019 Messenger RNA biogenesis [BR:
llv03019
]
125080396
04121 Ubiquitin system [BR:
llv04121
]
125080396
Enzymes [BR:
llv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125080396
Transcription factors [BR:
llv03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125080396
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
125080396
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
125080396
Ubiquitin system [BR:
llv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125080396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
zf-RING_2
zf-CCCH_2
Rtf2
DZR_2
Nup35_RRM_2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
125080396
NCBI-ProteinID:
XP_047550114
LinkDB
All DBs
Position
11:complement(90878192..91017333)
Genome browser
AA seq
713 aa
AA seq
DB search
MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQNERKQKISENRKHLASVRVVQKNLVFVVGLSQRL
ADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV
VDGRTLKASLGTTKYCSYFLKNMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQELYKLNPNFLQLSTGSVDKNKNKVTPLQRYDTPIDKPSDSLSIGNGDNSQQISNSDTP
SPPPGLSKSNPVIPISSSNHSARSPFEGAVTESQSLFSDNFRHPNPIPSGLPPFPSSPQT
SSDWPTAPEPQSLFTSETIPVSSSTDWQAAFGFGSSKQPEDDLGFDPFDVTRKALADLIE
KELSVQDQPSLSPTSLQNSSSHTTTAKGPGSGFLHPAAPTNANSLNSTFSVLPQRFPQFQ
QHRAVYNSFSFPGQAARYPWMAFPRNSIMHLNHTANPTSNSNFLDLNLPPQHNTGLGGIP
IADNSSSVESLNMKEWQDGLRALLPNININFGGLPNSSSPSNANHSAPTSNPATTDSLSW
DSPGSWTDPAIITGIPATSGNSLDSLQDDNPPHWLKSLQALTEMDGPSAAPSQTHHSAPF
STQIPLHRASWNPYPPPSNPSSFHSPPPGFQTAFRPPSKTPTDLLQSSTLDRH
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcagtcctgatgcgaaggaagaccctgtggaatgtcctctttgcatggagccc
ttggagatagatgatatcaacttttttccttgcacctgtggctatcagatttgccgattt
tgttggcatcgaattcgcactgatgaaaatgggctttgtcctgcatgtagaaagccatat
ccagaagacccagcagtttataaaccactttcccaggaagaattgcaaaggataaagaat
gagaaaaaacagaaacagaatgagagaaaacagaaaatatcagaaaaccgcaaacatttg
gctagtgtacgtgttgtacaaaaaaacctcgtctttgttgtaggtctgtctcagcgccta
gcagacccagaggttttaaaacgaccagaatattttgggaagtttggtaaaatacataaa
gttgtcatcaataatagcacatcatatgcaggctcacagggtccaagtgccagtgcttac
gtaacctatatccggtcagaagatgctctcagagccatacagtgtgtcaacaatgtggta
gtagatggcagaacacttaaggcatctctaggtacaacaaaatactgcagttacttctta
aagaatatgcagtgtccaaagcctgactgcatgtatctacatgaattgggggatgaggcg
gccagcttcacgaaagaggaaatgcaggcgggtaagcaccaagaatatgaacagaaacta
cttcaagaattatataagttaaaccccaattttcttcaactatctacgggttcagttgat
aagaataagaacaaagtgacaccactgcagaggtatgatacccccattgacaaaccttca
gattctctcagtatagggaatggtgataattcccagcagatatctaacagtgatacgcct
tcaccaccacctggtttatcaaaatccaatccagtcatccccatcagttcatccaatcac
agtgcacggtctccttttgaaggggcagtaactgagtcacagtcgttattctcagataac
tttcgccatcccaacccaatcccaagtgggcttcctcctttccccagctccccacagaca
tccagtgactggcctacagcaccagaaccacagagtctcttcacatcagaaacaatccca
gtatcatcctctacagactggcaagcagcatttggctttggttcttctaaacaaccagag
gatgacttgggttttgatccctttgatgtcactcgaaaagccttagcagacctgattgaa
aaggaactgtcagtccaagaccagccttccctttcacccacatctcttcagaactcctct
tcacacactacaaccgccaaaggtccgggctctggattcctgcatcctgctgcaccaaca
aatgccaactctctcaatagtaccttttcagtcttgccacagaggttccctcaatttcag
cagcaccgagcagtttataattcattcagttttccaggccaggcagcccgctatccttgg
atggcctttccacgcaatagcatcatgcacttgaaccacacagcaaaccccacctcaaat
agtaatttcttggacttgaatctcccgccacagcacaacacaggtctgggagggatccct
atagcagacaacagcagttctgtagagagtttaaatatgaaggaatggcaggacgggcta
agggcacttctacccaacattaacatcaactttggtggactgcccaattcctcctccccc
tccaacgccaaccacagtgcaccaacgtccaaccctgccaccaccgacagcctgagttgg
gacagccctggcagctggacagacccagccatcatcacaggtattccagcaacttcagga
aacagtttagactctcttcaagatgacaatcctccacactggctaaaatcccttcaggcc
ctcacagagatggacggccccagtgctgctccgtcacagacccaccacagcgcccccttc
agcacacagatccctctgcacagagccagttggaatccctacccacctccttcaaatcct
tccagcttccactccccacccccaggctttcagacagccttcagaccccccagcaaaacc
cccacagatttactacagagttcaacactggaccgccattag
DBGET
integrated database retrieval system
