Lutra lutra (Eurasian river otter): 125080928
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Entry
125080928 CDS
T08100
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03082
ATP-dependent chromatin remodeling
llv04714
Thermogenesis
llv05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125080928
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
125080928
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
125080928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125080928
03036 Chromosome and associated proteins [BR:
llv03036
]
125080928
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125080928
Chromosome and associated proteins [BR:
llv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125080928
PBAF complex
125080928
GBAF(ncBAF) complex
125080928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT_2
DUF919
SpeFL
Motif
Other DBs
NCBI-GeneID:
125080928
NCBI-ProteinID:
XP_047551119
LinkDB
All DBs
Position
1:206057546..206234288
Genome browser
AA seq
1107 aa
AA seq
DB search
MAAAAGGGGLGAAAGAAGAGGAAAAAGLAVYRRKDGGPASKFWESPETVSQLDSVRVWLG
KHYKKYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCH
ILGAAYKYKNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQNNCLTRPNIYLIPDIDLKL
ANKLKDIIKRHQGTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSY
DTWVHSNDVDAEIEDPPIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRI
STKNEEPVRSPERRDRKASANARKRKHSPSPPPPTPAESRKKSGKKGQASLYGKRRSQKE
EDEQEDLTKDMEDPTPVPNIEEVVLPKNVNPKKDSENTPVKGGTVADLDEQDEETVTAGG
KEDEDPSKGDQSRSLDPGEDNVTEQTNHIIIPSYASWFDYNCIHVIERRALPEFFNGKNK
SKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLTGDVCAVMRVHAFLEQWGLVNYQVD
PESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQVPAAQQMLNFPEKNKEKPIDLQNFG
LRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILH
FLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALE
EFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPDEPEKLEGAEEDK
METDTDGQQPEKAENKGENETDEGDKAQDGENEKNSEKEQDSEVSEDTKSEEKETEENKE
LTDTCKERESDLGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLVALLV
ETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGQNPQQAHQHSGGPGLAPLGAAGHPSMMPHQQPPPYPLMHHQMPPPHPPQPGQIPGP
GSMIPGQPMPGRMIPTVAANIHPPGSGPAPPGMPPMPGNILGPRVPLTAPNGMYAPPPPQ
PPPPPPPPPADGVPPPPAPGPPASAAP
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atggccgcggcggcgggcggcggcgggctgggggctgcggcgggcgccgcgggcgcggga
ggcgcggcggcggccgcgggcctggccgtttatcgacggaaggacggtggcccggccagc
aagttttgggagagcccggagacggtgtcccagctggattcggtgcgggtctggctgggc
aagcactacaagaagtatgttcacgcggatgctcctaccaacaaaacgctggctgggctg
gtggtgcagcttcttcagttccaggaagatgcctttgggaagcatgttaccaatccggcc
ttcaccaaactcccggcaaaatgtttcatggatttcaaagctggaggcaccttgtgtcac
attcttggggctgcttacaagtataaaaatgaacagggatggcgtaggtttgatctacag
aatccatcccgaatggatcggaatgttgaaatgtttatgaacattgagaaaacattggtg
cagaacaattgtctgaccagacccaacatctacctcattccagacattgatctgaagttg
gctaacaaattgaaggatattatcaaacgacatcaggggacttttactgatgagaaatca
aaagcttcccaccacatttatccatatccttcctcacaagaggatgaagaatggttgaga
ccggtgatgagaaaagataagcaggtgttagtgcattgggggttttacccagacagctat
gatacttgggtccatagtaatgatgttgatgcagaaattgaagatccaccaattccagaa
aagccgtggaaggttcatgcgaaatggattttggacactgatgttttcaatgaatggatg
aatgaggaggattatgaggtggatgagaacaggaagcccgtgagctttcgtcagcgaatt
tcaacaaagaatgaagagccagtcagaagtccagagaggagagataggaaagcatcagct
aatgctcgaaagaggaaacattcgccttcccctccgcctcctacacccgcagaatcccgg
aagaagagtggaaagaaaggccaagctagtctttatgggaagcgcagaagtcagaaagaa
gaagatgagcaagaagatcttaccaaggacatggaagacccaacaccggtacccaacata
gaggaagtggtgcttccaaaaaatgtgaacccaaagaaagacagtgaaaacacacctgtt
aaaggaggaactgtcgcagatctagatgaacaggatgaagaaacagtcacagcaggagga
aaggaagatgaagatcctagcaaaggtgatcagagtcgctcacttgaccctggagaagat
aatgtaacggagcagaccaatcacattattattcctagctacgcgtcgtggtttgattat
aactgtattcacgtgattgaacgacgtgctcttcctgagtttttcaatgggaaaaacaaa
tccaagacaccagaaatatacttggcatatcgaaattttatgattgacacatatcgccta
aacccccaagaatatttaaccagcactgcttgtcggaggaacttgactggagacgtgtgt
gctgtgatgagggttcatgcttttttagagcagtgggggcttgttaattaccaagtggat
ccagaaagtcgacccatggctatgggacctcctcctactcctcattttaatgtgttagct
gataccccctctgggcttgtgcctctacatcttcgatcacctcaggtccctgctgctcag
cagatgttaaattttcctgaaaagaacaaggaaaaaccaattgatttgcagaactttggt
cttcgtactgacatttactccaagaaaaccttagcaaagagtaaaggtgccagtgctgga
agagaatggaccgaacaggagacccttctgctcctggaggccctggagatgtacaaggat
gattggaacaaagtgtcagagcacgttggaagtcgtactcaggatgaatgcatcctccac
tttctgaggcttcctattgaggacccttaccttgagaattcggatgcttccctggggccc
ctggcttaccagcctgtccctttcagtcagtcaggaaacccagtcatgagcactgttgct
tttttggcatctgtggtggaccctcgtgtggcatctgccgcagcaaaagcagctttggag
gagttttctcgggtccgagaggaggtaccactagaattggtcgaagctcatgtcaagaaa
gtacaagaagcagcacgagcctctgggaaagtggatcccacctatggcctggagagcagc
tgcattgcaggcacgggacctgacgagccagagaagcttgaaggggctgaagaggacaaa
atggaaacagatactgatggtcagcagcctgaaaaggcagaaaacaaaggagaaaatgaa
acagatgaaggtgacaaagcacaagatggagaaaatgaaaaaaacagtgagaaggagcag
gacagtgaagttagtgaggataccaaatcagaagaaaaggaaactgaagagaacaaggag
ctcactgatacttgtaaagaaagagaaagtgatcttgggaagaagaaagtagaacatgaa
atttccgaaggaaatgtggccacggccgcagcagctgctctcgcctcagctgcaaccaaa
gccaagcacctggctgccgtggaggagagaaagatcaagtctctggtggccctgctggtt
gagacacagatgaagaagttggagatcaaacttcgacattttgaggagctggaaactatc
atggacagagagaaggaggctttagaacaacagaggcagcagttgcttactgaacgccag
aacttccacatggagcagctgaaatatgccgaactgcgagcccgacagcaaatggaacag
cagcagcacgggcagaaccctcagcaggcacaccagcactcaggagggcctggcctggcg
ccgcttggagcagcggggcaccccagcatgatgcctcatcagcagccccctccctaccct
ctgatgcaccaccagatgccgccacctcacccaccccagccaggtcagataccaggtcca
ggttccatgatccctgggcagcccatgccgggccgtatgatccccaccgttgcagccaac
atccacccccctgggagtggcccagcccctcctggtatgcctccaatgccaggaaacatc
ttaggaccccgggtacccctcacggcacctaatggcatgtatgccccaccgccgccgcag
ccgccgccaccaccgccaccaccgcccgcggacggagtccctccacctcctgctccaggc
ccaccagcctccgccgccccctag
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integrated database retrieval system
