Lutra lutra (Eurasian river otter): 125081618
Help
Entry
125081618 CDS
T08100
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
llv
Lutra lutra (Eurasian river otter)
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
llv03009
]
125081618
Enzymes [BR:
llv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125081618
Ribosome biogenesis [BR:
llv03009
]
Eukaryotic type
Pre-60S particles
Helicases
125081618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
125081618
NCBI-ProteinID:
XP_047552154
LinkDB
All DBs
Position
12:complement(83475272..83490010)
Genome browser
AA seq
603 aa
AA seq
DB search
MEHVTEGSWESLPMRLHPRVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKT
LAFVIPILEILLRRGEKLKKHQVGALVITPTRELAIQIDEVLAHFTKHLPQFSQTLWIGG
RSPGEDVARFKEQGGNIIVATPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMG
FEASINTILEFLPKQRRTGLFSATQTQEVESLVRAGLRNPVRISVKEKGVAASSTQKTPS
RLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFRGQSTCACVEYYGKALEALVKGVQIM
CIHGKMKHKRDKIFMGFRRLQSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCG
RTARIGHGGSALVFLLPMEESYVSFLEINQKCPLQEMKLQKNTGDLLPKLKSMALADRAV
FEKGMKAFVSYVQAYAKHECNLIFRIKDLDFASLARGFALLRMPKMPELRGRQFPDFVPA
DVNTDTIPFKDKVREKQRQKLLEQQRKEKRENEGRRKFIKNKAWSKQKAKKEKKKKMNEK
RKREEGSDIEDEDMEELLNDTRLLKKFKKGKITEEEFEKGLFSRGKRTVPRADMEIPDSE
EDC
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgtgacggagggctcctgggagtcgctgcccatgcggctgcacccgcgggtg
ctgggcgcgctgcgggagctgggcttcccgtacatgacgccggtgcagtccgcaaccatc
cctctgttcatgagaaacaaagacgtcgctgcagaggcggtcacaggtagcggcaaaacg
ctggcttttgtcatccctatcctggaaattctcctgagaaggggagagaagctaaagaag
catcaggttggggcgctcgtcatcacacccacgcgggagctggctattcagatagatgaa
gtcctggcgcatttcacgaagcacttgccgcagttcagccagactctctggatcggaggc
aggagtcctggagaagatgttgcaaggtttaaggaacaaggtgggaacatcattgtggcc
acgccaggccgcctggaggacatgttccggaggaaggcagaaggcttggatctggccagc
tgtgtgaggtccctcgacgtcctggtgttggatgaagcagacagacttctggacatgggg
tttgaggcaagcataaacaccatcctggagtttttgccaaagcagaggagaacaggcctt
ttctctgccactcagacccaggaagtggagagcctggtgcgagcagggctacggaacccc
gtccggatttcggtgaaggagaagggcgtcgcggccagcagcactcagaaaactccttcc
cgcctggagaactactacatggtatgtaaggcagatgagaaatttaaccagttggtacat
tttcttcgaaatcataagcaggaaaaacacctggtcttcttcaggggccaaagcacctgt
gcctgtgtggaatactacggaaaggctctggaggccctggtgaagggtgtgcagatcatg
tgcattcacgggaagatgaaacacaagcgtgataagatcttcatggggttccgcagattg
cagagtgggattttagtgtgcactgatgtcatggcccgaggaatagacattcctgaagta
aactgggttttgcagtacgaccctcccagcagcgcaagtgcctttgttcatcgctgtggc
cgtacagcccgcattggccacggtggcagcgcgcttgtgttcctccttcccatggaagag
tcctacgtcagtttccttgaaattaaccagaaatgccccctgcaggagatgaaactccag
aaaaacacaggagacctccttccaaagctcaagtccatggccttggctgacagagcagtg
tttgaaaagggcatgaaagcctttgtgtcctatgtccaggcttatgcgaagcatgaatgc
aacctcatcttcagaataaaggatcttgattttgctagtcttgctcgaggatttgccctg
ctgaggatgcccaagatgccagaactcagaggaaggcagtttccagatttcgtgcctgca
gatgttaacacagacaccattccatttaaagataaagttagagagaagcagaggcagaaa
ctactggagcaacaaagaaaagagaaaagagaaaatgaagggagaagaaaattcataaaa
aataaagcttggtcaaagcagaaggccaaaaaggagaagaagaaaaaaatgaatgaaaaa
aggaagagggaagagggttccgatattgaagacgaggacatggaggaacttctcaacgac
acgaggctcttgaaaaagtttaagaaaggcaaaattactgaagaagaatttgagaagggg
ttgttttcaaggggcaagagaacagtcccgagagcagatatggagatccctgattcggaa
gaggactgctga
DBGET
integrated database retrieval system
