Lutra lutra (Eurasian river otter): 125081890
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Entry
125081890 CDS
T08100
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03082
ATP-dependent chromatin remodeling
llv03250
Viral life cycle - HIV-1
llv04714
Thermogenesis
llv05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
125081890
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
125081890
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
125081890
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
125081890
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
llv01009
]
125081890
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125081890
03036 Chromosome and associated proteins [BR:
llv03036
]
125081890
Protein phosphatases and associated proteins [BR:
llv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125081890
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
125081890
SWI/SNF complex
125081890
Chromosome and associated proteins [BR:
llv03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
125081890
PBAF complex
125081890
SWI/SNF complex
125081890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
125081890
NCBI-ProteinID:
XP_047552737
LinkDB
All DBs
Position
12:65785215..65823428
Genome browser
AA seq
385 aa
AA seq
DB search
MMMMALSKTFGQKPVKFQLEDDGEFYMIGSEVGNYLRMFRGSLYKRYPSLWRRLATVEER
KKIVASSHGKKTKPNTKDHGYTTLATSVTLLKASEVEEILDGNDEKYKAVSISTEPPTYL
REQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENA
SQPEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFSEILCDDLDLNPLTFVPAIASA
IRQQIESYPTDSILEDQSDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSE
LGLGGEFVTTIAYSIRGQLSWHQKTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAE
MEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatggcgctgagcaagaccttcgggcagaagcctgtcaagttccagctggag
gacgatggcgagttctacatgatcggctctgaggtgggaaactacctccgtatgttccga
ggttctctgtacaagagatacccctcgctctggaggcgactagccactgtggaagagagg
aagaaaatagttgcatcgtcacatggtaaaaaaacaaaacctaacactaaggatcatggc
tacacgaccctggccaccagcgtgacgctgttaaaagcctcagaggtggaagagattctc
gacggcaatgacgagaagtacaaggcagtgtccatcagcacggagccccccacctacctc
agggaacagaaagccaagaggaacagtcagtgggtgcccaccttgcccaatagctcccac
catctggatgctgtgccctgctccacgaccatcaacaggaaccgcatgggccgggacaag
aagagaaccttccctctatgctttgatgaccatgacccagctgtgatccatgagaacgca
tcccagcctgaggtgctggtccccatccggctggacatggagatcgacgggcagaagctg
cgagatgcctttacctggaacatgaatgagaagctgatgacccctgagatgttttcagaa
atcctctgtgatgacctggatttgaacccgctgacatttgtgccagccatcgcctctgcc
atcagacaacagatagaatcttatcccacagacagcatcctggaggaccagtcagatcag
cgtgtcatcattaagctgaacatccacgtgggaaacatttcactggtggaccagtttgag
tgggacatgtcagagaaggagaactcaccagagaaatttgccctgaagctatgctcagag
ctggggctgggcggggagttcgtcaccaccattgcctacagcatccggggtcagctgagc
tggcatcagaagacctatgccttcagtgagaaccccctacccacggtggagattgccatc
cggaacacaggggatgctgaccagtggtgcccgctgctggagactctgacagatgccgag
atggaaaagaagatccgcgaccaggacaggaacacgaggcgtatgaggcgtcttgccaac
actgccccagcctggtaa
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