Lutra lutra (Eurasian river otter): 125081961
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Entry
125081961 CDS
T08100
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125081961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125081961
03041 Spliceosome [BR:
llv03041
]
125081961
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125081961
Spliceosome [BR:
llv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125081961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
125081961
NCBI-ProteinID:
XP_047552907
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All DBs
Position
12:73020456..73056839
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AA seq
683 aa
AA seq
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MSSESSKKRKPKVIRSDGAPAEGKRNRSDTEQEGKYYSEEAEVDLRDPGRDYELYKYTCQ
ELQRLMAEIQDLKSRGGKDVAVEIEDRRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAK
QKVDAYHLQLQNXLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYKEAPPDISKAEVTM
GDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQAS
LPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKAL
FKPPEDSQDDESDSDAEEEQTTKRRRPTLGVQXDDKRKEMLKRHPLSVMLDLKCKDDSVL
HLTFYYLMNLNIMTVKAKVTTATELITPISAGDLLSPDSVLSCLYPGDHGKKTPNPANQY
QFDKVGILTLRDYVLDLGHPYLWVQKLGGLHFPKEQPQHTVIADHSLSASHMETTMKLLK
TRVQSRLALHKQFASLEHGIVPVTSDCQYLFPAKVVSRLVKWVTIAHEDYMELHFTKDIV
EAGLAEDTNLYYMALVERGTAKLQAAVVLNPGYSSIPPVFQLCLNWKGEKTNSNDDNIRA
MESEVNVCYKELCGPRPSHQLLTNQLQRLCVLLDVYLETDSHDDSVEGPKEFPQEKMCLR
LFRGPSRMKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcagaatcaagcaaaaaacggaagcccaaagtgatccgaagtgatggagcacca
gctgaagggaagcgtaaccgttctgatacagagcaggaaggtaaatactacagtgaggag
gctgaagtggacctgcgggaccctggcagagactatgagctgtacaagtacacatgccag
gagttgcagaggctcatggctgagatccaggacctgaagagcagaggaggcaaggatgtg
gcggttgagatagaagatcggaggatccagagctgtgtgcatttcatgacattgaagaag
cttaatcgattagcccacatcaggttgaagaaaggaagagatcagacccatgaggccaag
cagaaagtagacgcctatcacctgcagctgcagaacnncttatatgaggtgatgcacctg
cagaaagagatcaccaagtgtctggagttcaagtcaaagcatgaagaaattgatctggtc
agtttagaggagttttataaggaggctcctccagatattagcaaggctgaagtcaccatg
ggagaccctcaccagcaaacccttgcacgtctggactgggagctagaacagcgaaaaagg
ctggcagagaagtaccgagagtgcctgtccaacaaggagaagatccttaaggaaattgag
gtcaagaaggagtacctaagcagcctccagcctcgcctcaatagcatcatgcaggcttcc
ctccccgtgcaagagtacctgttcatgccgttcgaccaggctcacaagcaatatgagaca
gctagacacctgccacctcccctctatgtcctcttcgtccaagccactgcatatgggcag
gcctgtgataagacattgtctgtggcaatcgaaggcagtgtggatgaagccaaggctctg
tttaagcctcctgaagattcccaagatgatgagagcgactcagatgctgaggaggagcag
accacgaaacgccggcgacccacactgggagttcagntggatgacaaacgcaaggagatg
ctgaagaggcacccactgtctgtcatgctggacctgaagtgcaaagatgacagtgtgctt
cacctgactttctactacctcatgaacctcaacatcatgacagtgaaagccaaagtgacg
actgccacggagctgatcacccccatcagtgcaggtgacttgctgtctcctgactcagtc
ttgagctgtttgtatccgggagatcacggaaagaaaactccaaatccagccaatcagtat
cagtttgataaagtcggcatcctgactttgagagactacgtacttgacctaggtcacccc
tatttgtgggtacagaagctgggtggcctccacttccccaaagagcagccccagcacacg
gtgattgctgaccactcgctgagcgccagccacatggagaccactatgaagctactgaag
accagggtgcagtcccgtctggcccttcacaaacagtttgcatccctggaacatggcatc
gtaccagttaccagtgattgccagtacctcttccctgcaaaggttgtctcccgcctggtg
aagtgggtgacgattgcccatgaggattacatggagctgcatttcaccaaggacattgtg
gaggcaggactggctgaggacacgaatctctactacatggcactcgtggaaaggggcaca
gccaaactccaggctgctgtggtgctaaaccctggctactcctccatcccacctgttttc
cagctctgtctgaactggaaaggggagaaaaccaatagcaacgatgacaatattcgggcc
atggagagcgaggtcaacgtttgctacaaggagctgtgcggcccccgacccagccatcag
ctcctgaccaaccagctgcagcgcctgtgtgtgctgctagatgtctacctggagactgac
agccatgatgacagtgtggaggggccgaaggagtttccccaggagaagatgtgtctgcgg
cttttcaggggccccagcaggatgaagccgtttaaatataaccatccgcaaggattcttc
agccatcgctga
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