Lutra lutra (Eurasian river otter): 125082719
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Entry
125082719 CDS
T08100
Name
(RefSeq) replication factor C subunit 5 isoform X1
KO
K10756
replication factor C subunit 3/5
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03030
DNA replication
llv03410
Base excision repair
llv03420
Nucleotide excision repair
llv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
125082719
03410 Base excision repair
125082719
03420 Nucleotide excision repair
125082719
03430 Mismatch repair
125082719
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
llv03032
]
125082719
03036 Chromosome and associated proteins [BR:
llv03036
]
125082719
03400 DNA repair and recombination proteins [BR:
llv03400
]
125082719
DNA replication proteins [BR:
llv03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
125082719
DNA Replication Termination Factors
ELG1-RFC complex
125082719
Chromosome and associated proteins [BR:
llv03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
125082719
DNA repair and recombination proteins [BR:
llv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
125082719
Check point factors
HRAD17(Rad24)-RFC complex
125082719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_24
AAA_16
AAA_11
AAA_22
AAA_assoc_2
RuvB_N
AAA_14
DEAD
DUF815
ResIII
AAA_5
AAA_19
ATPase_2
AAA_30
PhoH
TIP49
AAA_7
TniB
nSTAND3
DNAX_ATPase_lid
Mg_chelatase
Thioredoxin_6
bpMoxR
NPHP3_N
AAA_25
AAA_3
ABC_tran
AAA_28
Motif
Other DBs
NCBI-GeneID:
125082719
NCBI-ProteinID:
XP_047554566
LinkDB
All DBs
Position
12:91698640..91709479
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AA seq
340 aa
AA seq
DB search
METSAQQEQQQPVAAKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYG
PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKGFK
LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
LMVPRLEHVIEEEKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
HPLKSDIANILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRVH
LLAKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVTEA
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggagacctcagcgcagcaggagcagcagcagccggtggcggccaagatcagaaacctg
ccctgggttgaaaaataccggccacagacactgaacgatctgatttctcatcaggacatt
ctgagtaccattcagaagtttattagtgaagaccgcctgccgcacctgcttctctatggt
cctccggggacgggaaagacctccaccatcctggcctgtgcaaaacagctgtacaaagat
aaggaatttggctccatggtcttggagctgaatgcttcagatgaccgaggaatagatatc
gttcggggacccatcctgagctttgctagcacaaggacaatatttaagaaaggcttcaaa
ctagtgatcctggatgaagcagacgccatgactcaggatgcccagaacgccttgaggaga
gtgattgagaaattcacggaaaataccagattctgcctcatctgtaactacctgtcaaag
atcatccccgccctgcagtcccggtgtacaaggttccgattcggccccctgactcctgaa
ctcatggtcccccgcctggaacacgtcatagaagaagagaaagtggacctgagtgaggac
gggatgaaagcactcgtgaccctttccagcggagacatgcgaagggctctgaacattctg
cagagcaccaacatggccttcgggaaggtgacggaggagacggtctacacgtgcactggg
caccccctcaagtccgacattgccaacattctggactggatgttgaatcaagacttcacc
acggcctacagaaatattatggagttgaagacgctgaaggggttggcgctccatgacatc
ctgaccgagatccacctgttcgtgcacagagttgactttccatcttcagttcgagtacat
ttattggccaaaatggcagacatagagtacagactctctgtaggcaccaacgagaagatt
cagctgagttccctcattgccgctttccaggtcaccagggacctgattgtcacagaggcc
tga
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