Lutra lutra (Eurasian river otter): 125084247
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Entry
125084247 CDS
T08100
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125084247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125084247
03036 Chromosome and associated proteins [BR:
llv03036
]
125084247
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125084247
Coactivators
SAGA/TFTC/STAGA complex
125084247
Chromosome and associated proteins [BR:
llv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125084247
STAGA complex
125084247
TFTC complex
125084247
SAGA complex
125084247
SLIK complex
125084247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
WD40_Gbeta
TFIID_NTD2
WD40_CDC20-Fz
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_Aladin
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_VPS8
Beta-prop_IFT140_1st
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD_LRWD1
Tricorn_2nd
Beta-prop_DCAF12
Beta-prop_Nup120_160
PEP5_VPS11_N
RAB3GAP2_N
CDK5RAP3
Beta-prop_RIG_1st
eIF2A
Cytochrom_D1
Beta-prop_ACSF4
VPS8_N
LisH_PAC1
ABM-like
PROPPIN
Motif
Other DBs
NCBI-GeneID:
125084247
NCBI-ProteinID:
XP_047557294
LinkDB
All DBs
Position
14:63178754..63192882
Genome browser
AA seq
806 aa
AA seq
DB search
MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGGGGTTNNGPNGAGGNVAAASSSAGG
DGGTPKPAVAVSAVAPAGAAPVPAAAPEAGAPHDRQTLLAVLQFLRQSNLREAEEALRRE
ARLLEEAVAGTGAPEADGAGTEAASALLSRVTASAPGPGAPDPPGTGASGAAAVSGLATG
SAAPGKVGSVAVEDQPDVSAVLSAYNQQGDPTMYEEYYSGLKHFIECSLDCHRAELSQLF
YPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDF
RTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLA
GEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDPN
APPQNSPFFFHRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLT
AVDVTDDSSLIAGGFADSTVRVWSVTPKKLRSVKQAADLSLIDKESDDVLERIMDEKTAS
ELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFS
PYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRLW
DVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTV
CSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELLLGTYM
TKSTPVVHLHFTRRNLVLAAGAYSPQ
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgctggcggaggagcagacggaggtggcggtcaagttggagccagagggaccg
ccgacgctgctacctccgcaggcgggggacggcgctggcgagggtggcggcggcactacc
aacaacggccccaacggcgccggcgggaacgttgcggcggcgtcatcgtcggccggcggg
gatggtgggacccccaaacccgcggtggctgtctccgccgttgctccggcgggggcggcc
ccggtgcccgccgctgctccggaggccggcgccccccacgaccgacagactctgctggcc
gtgctgcagttcctgcggcagagcaacctccgcgaggccgaagaggcgctgcgccgtgag
gcccggctgctggaggaggcagtggcgggcaccggagccccagaggcggacggcgccggt
acagaggcggctagtgcgcttctcagccgggtcacagcctcggcccccggccccggggcc
cctgaccctccgggcaccggcgcttcgggggccgccgcggtctcgggtttagcgacaggt
tctgcggctccggggaaagttggaagtgtagctgtagaagaccagccggatgtcagtgct
gtgctgtcagcctacaaccaacaaggagaccccacaatgtatgaagaatactatagcgga
ctaaaacacttcattgaatgttccttggactgccatcgggcagaattatcccaactcttt
tatcctctgtttgtacacatgtacttggaactagtctacaatcaacatgagaatgaagca
aaatcattttttgagaagttccatggagatcaggaatgttattaccaggatgacctacga
gtattatctagtcttaccaaaaaggaacacatgaaagggaatgagaccatgttggatttt
cgaacaagtaaatttgttctgcgtatttcccgtgactcgtaccaactcttgaagaggcat
cttcaggagaaacagaacaatcagatatggaacatagttcaggagcacctctacattgac
atctttgatgggatgccgcgtagtaagcaacagatagatgcgatggtgggaagtttggca
ggagaggctaaacgagaggcaaacaaatcaaaggtattttttggtttattaaaagagcca
gaaattgaggtgcctttagatgatgaagatgaagaaggagaaaatgaagaaggaaaacct
aaaaagaagaagcctaaaaaagatagcattggatccaaaagcaaaaaacaagatcccaat
gctccacctcaaaacagtccgtttttctttcacagaatccctcttccagagttgaaagac
tcagataagttggataagataatgaatatgaaagaaaccaccaaacgagtacgccttggg
ccagactgtttaccctccatttgtttctatacattcctcaatgcttaccagggcctcact
gcagtggatgtcactgatgattctagtttgattgctggaggttttgcagattcaactgtt
agagtgtggtctgtgacacccaaaaagcttcgtagtgttaaacaagcagcagatcttagc
ctcatagacaaagaatcagatgatgtcttagaaagaataatggatgagaaaacagcaagt
gagttgaagattttgtatggtcatagcgggcctgtctatggagccagcttcagtccggat
aggaactatttgctttcctcttcagaggatggaactgttagattgtggagtcttcaaaca
tttacttgcttggtgggatataaaggacacaactacccagtatgggacacacagttttct
ccatatggatattattttgtgtcagggggccacgatcgagtagctcggctctgggctaca
gaccactatcagcctttaaggatatttgctggccatcttgctgatgtgaattgtaccaga
ttccatccaaattctaattatgttgctacgggctctgcagacagaactgtgcggctctgg
gatgtcctgaatggaaactgtgtaagaatattcactggacacaagggaccaattcattcc
ttgacattttctcccaatgggagattcctggctacaggagccacagatggcagagtactc
ctttgggatattggacatggtttgatggttggagaattaaaaggccacactgatacagtc
tgttcacttaggtttagtagagatggtgaaattttggcatcaggttcaatggataataca
gtccggttgtgggatgctgtcaaagcatttgaagatttagagaccgatgactttactaca
gccactgggcatataaatttacctgagaattcacaggagttattgttgggaacatatatg
accaaatcaacaccagttgtacacctccattttactcgaagaaacttggttctagctgca
ggagcttatagtccgcaataa
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integrated database retrieval system
