KEGG   Lutra lutra (Eurasian river otter): 125084319
Entry
125084319         CDS       T08100                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
llv  Lutra lutra (Eurasian river otter)
Pathway
llv03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:llv00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    125084319
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:llv03021]
    125084319
   03036 Chromosome and associated proteins [BR:llv03036]
    125084319
Transcription machinery [BR:llv03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     125084319
   Coactivators
    SAGA/TFTC/STAGA complex
     125084319
Chromosome and associated proteins [BR:llv03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     125084319
    STAGA complex
     125084319
    TFTC complex
     125084319
    SAGA complex
     125084319
    SLIK complex
     125084319
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz WD40_Gbeta Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_WDR75_1st DSE1_N Beta-prop_SCAP WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_Aladin CFAP251_N Beta-prop_WDR41 Beta-prop_RIG_2nd PAC11 Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_VPS8 Beta-prop_NOL10_N Tricorn_2nd Beta-prop_SPT8 Beta-prop_DCAF4 Beta-prop_HPS5 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_EIPR1 Beta-prop_WDR19_1st ASA1 PEP5_VPS11_N PROPPIN Beta-prop_IP5PC_F eIF2A Ge1_WD40 TRM82_WD WD_LRWD1 Nbas_N Beta-prop_ELP1_1st YfmQ PD40 ODR4-like vATP-synt_AC39
Other DBs
NCBI-GeneID: 125084319
NCBI-ProteinID: XP_047557447
LinkDB
Position
14:complement(1530962..1560816)
AA seq 635 aa
MGRNTGVILDLAEVQRLKASCSSPISCESVVILRISQLVWFWNQKVMKRVRTEQIQMAVS
CYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQF
GRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFYSRFHGMFLQNASQK
DVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYDYLIRYLQSDNNTALCKVLTLH
IHLDVQPAKRTDYQLYASGSSSRSEGSGLEPTDMPAPILQNEAALEVLQESIKRVKDGPP
SLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHPVDVSRI
HLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSF
TNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKF
HPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKL
WDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRNTHCSAPADGSSGE
LVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq 1908 nt   +upstreamnt  +downstreamnt
atgggtagaaatactggtgtcattttagacttagcggaagtgcagcgcttgaaagcttca
tgcagttctcccatcagttgtgaaagtgtcgttatactgcggatctcgcagcttgtgtgg
ttctggaatcagaaggtcatgaaacgagtgcgcaccgagcagattcagatggcagtgtcc
tgctacctcaaacgccggcagtacgtggactccgacggtcccctgaagcaaggactgcgg
ctgtcacagactgctgaggagatggcagccaacctcacagtccaatcagaatccggttgt
gccaacatagtgtctgcagccccttgccaggcagagccccagcagtatgaagtacagttt
ggacgactacggaattttctcactgattctgattcccagcatagccacgaagtgatgcct
ctcctctatcctctctttgtctacctccatctcaacctggtccagaatagtccgaagagc
acagtggaaagtttttacagccgcttccacggaatgtttctgcagaacgctagccagaag
gatgtcattgagcagctacagaccactcaaaccatccaggacatcctgtctaacttcaag
cttcgagcattcctagataacaagtacgtggtgcgtctccaggaagacagctacgactac
cttatccgctacctccaaagtgacaacaacaccgccctgtgcaaagtcctcaccttacat
atccatcttgacgtgcagcccgccaagagaacagattaccagctctacgccagcggcagc
tcctctcggagtgagggcagcggccttgagcccaccgacatgcctgcccctattctacag
aacgaggctgccctggaggtcttgcaggagagcattaagcgcgtcaaggatggccctccc
tccctcaccaccatctgtttctatgccttctataacacagagcagctgttgaacactgca
gaaatctccccagatagcaagctgcttgctgcggggtttgacaactcctgtataaaactg
tggagtttacgatccaagaagttaaaatcagaaccccatccagtagacgtgtcccgcatc
cacttggcttgtgacattctggaggaggaggatgatgaggatgacaatgcgggcacagag
atgaagatcctccggggacactgtggaccagtatacagcaccaggttccttgcagacagc
tcagggttgctctcttgttctgaagacatgtccattaggtactgggacctcggcagtttc
accaacactgtgttgtaccaaggacatgcctaccctgtgtgggacctggacattagcccg
tatagcctgtactttgccagcgggtcccatgaccgcaccgcaaggctgtggtcatttgat
cggacgtacccgctgagaatatatgccggacacctggcagatgtggactgtgtcaaattc
caccctaattcaaactacttagccacgggctcgaccgacaagactgtccggctgtggagc
gctcaacagggcaactcagtgaggctcttcacgggccaccgtggccctgtgctctctctt
gccttctctcccaacggtaagtacttggcatcagccggcgaggaccagcggctgaagcta
tgggacttggcctctgggaccctttataaagaactgaggggccacacggacaatatcacc
agcctcaccttcagcccggacagcagcctgattgcgtccgcgtccatggacaattccgtg
cgcgtctgggacatcaggaacacgcactgcagtgcacccgcggacggctcctcgggcgaa
ctcgtgggcgtgtacaccgggcagatgagcaacgtgctgagcgtgcagttcatggcctgc
aacctccttctagtgactggaatcacacaagagaatcaggaacattaa

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