Lutra lutra (Eurasian river otter): 125084319
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Entry
125084319 CDS
T08100
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125084319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
llv03021
]
125084319
03036 Chromosome and associated proteins [BR:
llv03036
]
125084319
Transcription machinery [BR:
llv03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125084319
Coactivators
SAGA/TFTC/STAGA complex
125084319
Chromosome and associated proteins [BR:
llv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
125084319
STAGA complex
125084319
TFTC complex
125084319
SAGA complex
125084319
SLIK complex
125084319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
TFIID_NTD2
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_Nup120_160
Beta-prop_EIPR1
Beta-prop_WDR19_1st
PEP5_VPS11_N
PROPPIN
Beta-prop_IP5PC_F
eIF2A
Ge1_WD40
WD_LRWD1
Nbas_N
Beta-prop_ELP1_1st
Mala_s_1-like
vATP-synt_AC39
ODR4-like
Motif
Other DBs
NCBI-GeneID:
125084319
NCBI-ProteinID:
XP_047557447
LinkDB
All DBs
Position
14:complement(1530962..1560816)
Genome browser
AA seq
635 aa
AA seq
DB search
MGRNTGVILDLAEVQRLKASCSSPISCESVVILRISQLVWFWNQKVMKRVRTEQIQMAVS
CYLKRRQYVDSDGPLKQGLRLSQTAEEMAANLTVQSESGCANIVSAAPCQAEPQQYEVQF
GRLRNFLTDSDSQHSHEVMPLLYPLFVYLHLNLVQNSPKSTVESFYSRFHGMFLQNASQK
DVIEQLQTTQTIQDILSNFKLRAFLDNKYVVRLQEDSYDYLIRYLQSDNNTALCKVLTLH
IHLDVQPAKRTDYQLYASGSSSRSEGSGLEPTDMPAPILQNEAALEVLQESIKRVKDGPP
SLTTICFYAFYNTEQLLNTAEISPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHPVDVSRI
HLACDILEEEDDEDDNAGTEMKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSF
TNTVLYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKF
HPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKL
WDLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRNTHCSAPADGSSGE
LVGVYTGQMSNVLSVQFMACNLLLVTGITQENQEH
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgggtagaaatactggtgtcattttagacttagcggaagtgcagcgcttgaaagcttca
tgcagttctcccatcagttgtgaaagtgtcgttatactgcggatctcgcagcttgtgtgg
ttctggaatcagaaggtcatgaaacgagtgcgcaccgagcagattcagatggcagtgtcc
tgctacctcaaacgccggcagtacgtggactccgacggtcccctgaagcaaggactgcgg
ctgtcacagactgctgaggagatggcagccaacctcacagtccaatcagaatccggttgt
gccaacatagtgtctgcagccccttgccaggcagagccccagcagtatgaagtacagttt
ggacgactacggaattttctcactgattctgattcccagcatagccacgaagtgatgcct
ctcctctatcctctctttgtctacctccatctcaacctggtccagaatagtccgaagagc
acagtggaaagtttttacagccgcttccacggaatgtttctgcagaacgctagccagaag
gatgtcattgagcagctacagaccactcaaaccatccaggacatcctgtctaacttcaag
cttcgagcattcctagataacaagtacgtggtgcgtctccaggaagacagctacgactac
cttatccgctacctccaaagtgacaacaacaccgccctgtgcaaagtcctcaccttacat
atccatcttgacgtgcagcccgccaagagaacagattaccagctctacgccagcggcagc
tcctctcggagtgagggcagcggccttgagcccaccgacatgcctgcccctattctacag
aacgaggctgccctggaggtcttgcaggagagcattaagcgcgtcaaggatggccctccc
tccctcaccaccatctgtttctatgccttctataacacagagcagctgttgaacactgca
gaaatctccccagatagcaagctgcttgctgcggggtttgacaactcctgtataaaactg
tggagtttacgatccaagaagttaaaatcagaaccccatccagtagacgtgtcccgcatc
cacttggcttgtgacattctggaggaggaggatgatgaggatgacaatgcgggcacagag
atgaagatcctccggggacactgtggaccagtatacagcaccaggttccttgcagacagc
tcagggttgctctcttgttctgaagacatgtccattaggtactgggacctcggcagtttc
accaacactgtgttgtaccaaggacatgcctaccctgtgtgggacctggacattagcccg
tatagcctgtactttgccagcgggtcccatgaccgcaccgcaaggctgtggtcatttgat
cggacgtacccgctgagaatatatgccggacacctggcagatgtggactgtgtcaaattc
caccctaattcaaactacttagccacgggctcgaccgacaagactgtccggctgtggagc
gctcaacagggcaactcagtgaggctcttcacgggccaccgtggccctgtgctctctctt
gccttctctcccaacggtaagtacttggcatcagccggcgaggaccagcggctgaagcta
tgggacttggcctctgggaccctttataaagaactgaggggccacacggacaatatcacc
agcctcaccttcagcccggacagcagcctgattgcgtccgcgtccatggacaattccgtg
cgcgtctgggacatcaggaacacgcactgcagtgcacccgcggacggctcctcgggcgaa
ctcgtgggcgtgtacaccgggcagatgagcaacgtgctgagcgtgcagttcatggcctgc
aacctccttctagtgactggaatcacacaagagaatcaggaacattaa
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