Lutra lutra (Eurasian river otter): 125086377
Help
Entry
125086377 CDS
T08100
Name
(RefSeq) nucleoprotein TPR isoform X1
KO
K09291
nucleoprotein TPR
Organism
llv
Lutra lutra (Eurasian river otter)
Pathway
llv03013
Nucleocytoplasmic transport
llv05014
Amyotrophic lateral sclerosis
llv05200
Pathways in cancer
llv05216
Thyroid cancer
Brite
KEGG Orthology (KO) [BR:
llv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125086377
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
125086377
09162 Cancer: specific types
05216 Thyroid cancer
125086377
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
125086377
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
llv03019
]
125086377
Messenger RNA biogenesis [BR:
llv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
125086377
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_MLP1_2
Seryl_tRNA_N
YwqH-like
Imm70
Motif
Other DBs
NCBI-GeneID:
125086377
NCBI-ProteinID:
XP_047561611
LinkDB
All DBs
Position
15:complement(22028853..22097529)
Genome browser
AA seq
2443 aa
AA seq
DB search
MPSSGSVSRSRQRGRPMASRSFDGSRRGSLRRAGAREPRSEVAEAAAQASGSSWSSSFFS
VSAAPAAGPAASGPIDMAAVLQQVLERTELNKLPKSVQNKLEKFLADQQSEIDGLKGRHE
KFKVESEQQYFEIEKRLSHSQERLVNETRECQSLRLDLEKLNNQLKALTEKNKELEVAQD
RNIAIQSQFTRTKEELEAEKRDLVRTNERLSQELEYLTEDFKRLNEKLKESNTTKGDLQL
KLDELQASDVSVKYREKRLEQEKELLHNQNTWLNTELKTKTDELLALGREKGNEILELKC
NLENKKEEVSRMEEQMNGLKTSNENLQKHVEELLTKLKEAKEQQASMEEKFHNELNAHIK
LSNLYKSAAEDSEAKSNELTRAVDELHKLLKEAGEANKAIQDHLLEVEESKDQMEKEMLD
KIGKLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVE
TQDQLLLEKLENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSVKLEQAMKE
IQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSA
DISSSSEVISQHLVSYRNIEELQQQNQRLLVALRELGETREREEQETTSCKIAELQLKLE
NALTELEQLRESRQHQMQLVDSIVRQRDMYRILLSQTTGVAIPLQASSLDDISLASTPKR
SSTSQTASTPASVSVIESAEAIEAKAALKQLQEIFENYKKEKADNEKIQNEQLEKLQDQI
TDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLHERNQKLTATTQKQEQIINTMT
QDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQG
ILERSETETKQRLSSQIEKLEHEISHLKKKLDNEVEQRHTLTRNLDVQLLDTKRQLDTET
NLHLNTKELLKNAQKEIATLKQHLSNMEVQLASQSSQRTGKGQPTSKEDVDDLLSQLRQA
EEQVNDLKERLKTSSSNVEQYRAMVTSLEESLNKEKQVTEEVRKNIEVRLKESAEFQTQL
EKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLNSVQNEVQEALQRAGTALNNEQQA
RRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMASVRQHLEETTQKAESQL
LECKASWEERERMLKDEVAKCMSRCEDLEKQNRLLHDQIEKLSDKVVASVKEGVQGPLNV
SLSEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNA
EREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQDLQQMQAKVRKLELDI
LPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQHLVSQQKDPDTEEYRKLLSEKEVH
TKRIQQLTEEIGRLKAEIARSNASLTNNQNLIQSLKEDLNKVRSEKETIQKDLDAKIIDI
QEKVKTITQVKKIGRRYKTQYEELKAQQDKVMETSVQSSGDHQEQHVSVQEMQELKDTLN
QAETKTKSLESQVENLQKTLSEKEAEARNLQEQTVQLQSELSRLRQDLQDRTTQEEQLRQ
QITEKEEKTRKAIVAAKSKIAHLAGVKDQLTKENEELKQRNGALDQQKDELDVRMTALKS
QYEGRISRLERELREHQERHLEQRDEPQEPTNKVPEQQRQITLKTTPASGERGIASTSDP
PTANIKPTPVVSTPSKVTAAAMAGNKSTPRASIRPMVTPATVTNPTTTPTATVMPTTQVE
SQEAMQSEGPVEHVPVFGSTSGSVRSTSPNVQPSIPQPILTVQQQTQATAFVQPTQQSHP
QIEPANQELSPNIVEVVQSSPVERPSTSTAVFGTVSATPSSSLPKRTREEEEDSTIEASD
QVSDDTVELPLSKKLKSVTPVGTEEEVMAEESTDGEVETQVYNQDSQDSIGEGVTQGDYT
PMEDSEETSQSLQIDLGPLQSDQQTTTSSQDGQGKGDDVIVIDSDDEEEDDDENDGEHED
YEEDEDDDDDDEDDTGMGDEGEDSNEGTGSADGNDGYEADDAEGGDGTDPGTETEESMGG
GESNQRAADSQNSGEGNTGTAESSFSQDISREQQPSSASERQTPRAPQSPRRPPHPLPPR
LTIHAPPQELGPPVQRIQMTRRQSVGRGLQLTPGIGGMQQHFFDDEDRTVPSTPTLVVPH
RTDGFAEAIHSPQVAGVPRFRFGPPEDMPQTSSSHSDLGQLASQGELSLGLGMYETPLFL
AHEEESGGRSVPTTPLQVAAPVTVFTESTTSDASEHASQSVPMVTTSTGTLSTTNETATG
DDGDEVFVEAESEGISSEAGLEIDSQQEGEPAQASEESDLPSTSQDPPSSSSVDTSSSQP
KPFRRVRLQTTLRQGVRGRQFNRQRGVSHAMGGRGGINRGNIN
NT seq
7332 nt
NT seq
+upstream
nt +downstream
nt
atgccctctagtggttcagtgtctagaagccgccaaagaggacgacccatggcatcccgg
agctttgacgggtcccgccgcgggagcctccggcgggcaggcgcacgcgagccgcggagc
gaggtggccgaggcggccgcccaggcttctgggtcctcttggtcttcgtctttcttctcg
gtttctgctgcgccggctgctggccccgcggcctccggcccgatcgacatggcggctgtg
ttgcagcaagtcctggagcgcacagagctgaacaagctacctaagtccgtccagaacaaa
ctggagaagttccttgcggaccagcaatccgagatcgatggcctgaagggacggcatgag
aaatttaaggtggagagtgaacaacagtactttgagatagagaagaggctgtcccacagt
caggagagacttgtgaatgaaacccgagagtgtcaaagcttgaggcttgacctagagaag
ctcaacaatcaactgaaggcactcactgagaaaaataaagaactcgaagttgctcaggat
cgcaatattgccattcagagccagtttacaaggacaaaagaagaattagaagctgagaaa
agagacttagttagaaccaatgagagactatctcaagaacttgaatatttaacagaggat
tttaaacgtctaaatgaaaaacttaaggaaagcaataccacaaagggtgatctgcagtta
aaactggatgaacttcaagcatctgatgtttctgttaaatatcgagaaaaacgcttggag
caagaaaaggagttgttacataatcagaatacatggctgaatacagagttaaaaactaaa
actgatgaacttttggctcttggcagagaaaaaggaaatgagatattagagcttaaatgt
aatcttgaaaacaaaaaagaggaggtttctagaatggaagaacagatgaatggcttgaaa
acatcaaatgaaaatcttcaaaaacatgtagaagagctcttgaccaaactgaaagaggcc
aaggaacagcaggccagtatggaagagaaattccacaatgaattaaatgctcacataaag
ctctctaatctatacaagagtgctgctgaagactcagaggcaaagagcaatgaactgacc
cgagcagtagatgaactacacaaacttttgaaagaagctggagaagccaataaagcaata
caagatcatcttttagaagtggaggaatctaaagatcaaatggaaaaagaaatgcttgac
aaaatagggaaattggagaaggaattagagaatgcaaatgaccttctttctgccacaaaa
cgtaaaggagccatactatctgaagaagagcttgcagccatgtctcctactgcggcagct
gtagctaagatagtgaaaccgggcatgaaattaactgagctatataatgcttatgtggaa
actcaggatcagttgcttttggagaaactagagaacaaaagaatcaataagtatctggat
gaaatagtgaaggaagttgaagccaaagcaccaattttgaaacgccaacgtgaggagtat
gaacgtgcacagaaagctgtggcaagtttatctgttaagcttgaacaagctatgaaggag
attcagcgattgcaggaggacactgataaagcaaacaaacattcatctgtgcttgaaaga
gacaatcaaaggatggaaatacaaataaaagatctttcacaacagattagagtgcttttg
atggaacttgaagaagcaaggggtaatcatgtaattcgtgatgaggaagtaagctctgct
gatataagtagttcatccgaagtaatatcacagcatctagtatcttatagaaatattgaa
gaacttcaacagcaaaatcaacgtctcttagtggcccttagagaacttggggaaaccaga
gaaagagaagaacaagaaacaacttcatgcaaaattgctgagctgcagctaaaacttgag
aatgccctcactgaattagaacaactccgtgagtcacgacaacatcaaatgcagcttgtt
gattccatagttcgtcagcgtgacatgtaccgtattttgttgtcacaaacaacaggagtt
gccattcctttgcaagcttcaagcttagatgatatttctcttgcgtcaactccaaaacgt
tcaagtacatcccagactgcttccactcctgcttcagtgtctgtaattgagtcagcagag
gccatagaagccaaggctgcccttaaacagttgcaggaaatttttgagaattacaaaaaa
gaaaaggcagataatgaaaaaatacaaaatgagcagctcgaaaaacttcaggatcaaatt
acagatttgcgatcacaaaacaccaaaatttctacacaactagactttgcttctaaacgt
tatgaaatgctacaagataacgttgaaggatatcgtcgagaaatcacatccctccatgag
agaaatcagaaacttactgcaacaactcaaaagcaggaacagatcatcaatacaatgacg
caggatttgagaggagcaaatgaaaagctagctgttgcggaagtaagagcagaaaacttg
aaaaaggaaaaggaaatgcttaaattgtcagaagtccgtctttctcagcaaagagagtct
ttattagctgaacaaagagggcaaaacttgctgctgactaatctgcaaacaattcaggga
atattagagcgatctgaaacagaaaccaaacaaaggcttagtagccagatagaaaaactg
gaacatgagatatctcatctaaagaagaagctggataatgaggtggagcaaagacataca
cttactagaaatctagatgttcaacttttagatacaaagagacagctagatactgagaca
aatcttcatcttaacacaaaagaactattaaaaaatgctcaaaaggaaattgctactttg
aaacaacatctcagtaatatggaagtacagcttgcttctcagtcctcacagagaactggt
aaaggtcagcctaccagcaaagaagatgtggatgatcttctgagtcagctaagacaggcg
gaagagcaggtgaatgatttgaaggagagactcaaaacaagcagtagtaatgtggaacag
tatcgtgcaatggttactagcttagaagaatctcttaacaaggaaaaacaggtgacagaa
gaagtacgtaaaaatattgaagttcgtctaaaagagtcagctgagtttcagacacagttg
gaaaagaagttgatggaagtagagaaggaaaagcaggaacttcaggatgacaagagaaaa
gccatagagagcatggaacaacagttatctgagttaaagaaaacactcaacagcgttcag
aatgaagtacaagaagctcttcagagagctggcacagctttgaataatgaacagcaagcc
agacgtgactgtcaggaacaggctaaaatagctgtggaagctcagaataaatatgagaga
gaattgatgctacatgctgcggatgttgaagctctgcaagctgccaaggagcaggtttcc
aaaatggcatcagtccgccagcatttggaagaaacgacccagaaagcagaatcacagtta
ttggagtgtaaagcatcttgggaggaaagagagagaatgttaaaggatgaagttgccaag
tgtatgtctcgctgtgaagatctagagaaacaaaacagattgcttcatgatcagattgaa
aaattaagtgacaaggttgttgcctctgtgaaagaaggtgtacaaggtcccttgaatgta
tctctcagtgaggaagggaaatctcaagaacaaattttagaaattctcagatttatacga
cgagaaaaagaaattgctgaaaccaggtttgaggtggctcaggttgagagtctgcgttat
cgacaaagagttgaacttttagaaagagagctgcaggaactgcaggatagtctaaatgct
gaaagagagaaagtccaggtaactgcaaaaacaatggcccagcatgaggaactgatgaag
aaaactgaaacaatgaatgtagtgatggagaccaataagatgctaagagaagagaaagag
aggctggagcaggatctacagcagatgcaagcaaaggtaaggaaactggagttagatatt
ttacccttacaagaagcaaatgccgagctgagtgagaaaagcggtatgttgcaagcagag
aagaagttactagaagaagatgtcaaacgttggaaagcacggaaccagcatctagtaagt
caacagaaagatccagatacagaagaatatcggaagctcctttctgaaaaggaagttcat
actaagcgtattcaacagttgactgaagaaattgggagacttaaagctgaaatagcaaga
tcaaatgcatctttgaccaacaaccagaacttaatccagagtctaaaggaagacttaaat
aaagtaagaagtgaaaaggaaaccatacaaaaggacttagatgccaaaataattgatatc
caagaaaaagtcaaaactattactcaggtcaagaagattgggcgtagatacaagactcaa
tatgaagaacttaaagcacaacaggacaaggtcatggagacctcagttcagtcttctgga
gaccaccaggaacagcatgtctcagtccaagaaatgcaggagctcaaagataccctcaat
caagctgaaacaaagacaaaatcactagagagtcaagtagaaaatctgcagaagacatta
tctgaaaaagaggcagaagcaagaaatctgcaggaacagactgtgcagcttcagtctgag
ctttcacgactccgtcaggatcttcaagatagaaccacacaagaggagcagctccgacag
cagataactgaaaaggaagaaaaaacaagaaaggccatagtagcagcaaagtcaaagatt
gcacacttagctggtgtgaaagatcagttaactaaagaaaatgaggagcttaaacaaagg
aatggagccttagatcagcagaaagatgaattggatgttcgaatgactgctcttaaatcc
cagtatgaaggtcgaattagtcgcttagaaagagaactccgagagcatcaagagagacac
cttgagcagagagatgagcctcaagaacctactaataaggtcccagaacagcagagacag
atcactttgaaaacaactccagcttctggtgaaagaggaattgccagcacatcagaccca
ccaacagccaatatcaagcctactcctgttgtgtctactccaagtaaagtgacagctgca
gcaatggctgggaataaatcaacacccagggctagtatccgcccaatggtcacacccgca
actgttacaaatcctactactaccccaacagctacagtgatgcccactacgcaagtagaa
tcacaggaagctatgcagtcagaagggcctgtggaacatgttccagtttttggaagcaca
agtggttctgtccgttctactagtcctaatgtccagccttctatccctcagcctatttta
actgttcagcagcaaacacaggctacagcttttgtgcagcccacccagcagagtcatcct
cagattgagcctgcaaatcaagagctatcccccaacatagtagaggttgttcaaagttca
ccagttgagcggccttctacttccacagcagtatttggcactgtgtcagctaccccaagt
tcttctttgcctaaacgaacacgtgaagaagaagaggatagcaccatagaagcatcagat
caagtctctgatgacacagtggaactgcctctttcaaagaagttgaaaagtgttacccct
gtaggaactgaggaagaagttatggcagaagaaagtactgatggagaggtagaaactcaa
gtatataaccaggattctcaagattctattggagaaggagttacccagggagattatact
ccaatggaagacagtgaagaaacctctcagtctctacaaatagaccttggaccccttcag
tcagatcagcaaacaacaacttcatcccaagatggtcagggcaaaggagatgatgtcatt
gtgattgacagtgatgatgaagaagaggatgatgatgaaaatgatggggaacatgaggat
tacgaggaggatgaagatgatgatgacgatgatgaagacgacacagggatgggagatgag
ggtgaggacagtaacgaaggcaccggcagtgcagacggcaatgatggatacgaagctgat
gatgctgagggcggtgatgggactgatccaggtacagaaacagaagaaagtatgggcgga
ggtgagagcaatcagagagctgctgattctcaaaacagtggtgaaggtaatacaggtact
gcagagtcctctttttcccaggacatttctagagaacagcagccatcatcagcatctgaa
agacagactcctcgagcacctcagtctccaagacgccccccacaccctcttccaccacga
ctcaccattcatgctccacctcaagaactggggccaccagttcagagaattcagatgact
cggagacagtctgttggacgggggcttcagttgactcccggaattggtggcatgcagcag
catttttttgatgatgaagacagaacagttccaagtaccccaactcttgtggtgccacat
cgtactgatggatttgctgaagcaattcattccccacaggttgctggtgtccctagattc
cggtttgggccgcctgaagatatgccacagacaagttcaagtcactctgatcttggccag
cttgcttctcaaggagaattgtctttaggtttaggaatgtatgaaacacccctcttcctc
gctcatgaagaagagtcaggtggccgaagtgttcccactacccctctgcaagtagcggcc
ccggtgacggtgtttactgagagtaccacgtctgatgcttcagagcatgcctctcagtcc
gttcccatggtgacaacatccactggcactttatccaccacaaatgaaacagcaacaggt
gatgatggggatgaagtatttgtggaggcagaatctgaaggtattagttccgaagcaggc
ctagaaattgatagccagcaggaaggagagcctgctcaggcgtctgaggagtcagatctc
ccttctaccagccaggatcctccatccagctcttctgtggatactagcagtagtcaacca
aagcctttcagacgagtaagacttcagacaacattgagacaaggtgtccgtggtcgtcag
tttaacagacagagaggtgtgagccatgcaatgggagggagaggaggaataaatagagga
aatattaattaa
DBGET
integrated database retrieval system